R90363

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90363

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90363

Determination of introduced cDNA(s)

  • J013003G01 - Rice Full-length cDNAs - Original: J013003G01

    full reading [+] show sequence

    Nucleotide sequence: J013003G01 - full reading 
    GGTCTTCTTC TTCGTCTCCG TCTCCGTCTC CGTCTCGTCG CCGCCTAATC 
    CCCCACCACC TCGAAACCCA GATCAAACCC TCCCTCCCCT TCCACCCCCG 
    CACGATCCAC CTACCCCCTC CCCCCTTCTT CTCCCTCGCG CGCGCACGCA 
    GCTAGCTAGC TACCGCGAGG AACCGAATCC AATCGAGCTC AGGACGAGGC 
    GGAGGAGGAG AAACCACCCC GGATTCTCTT GATCCGGAGT CCAAGAAACC 
    ACGGGGTAGT GCCGTAGTGG AAGCAATCAA TCAGCAGCAG CAGGATCGAC 
    CCCCCCCCCC TTCTTGATTG CTGGTTTGGC CGGCGGCAAT GCCGGATCCG 
    GCCGGGCTGC CATGGCTGCG GCGTCTGTGA GCCGCGTCGT CGGCGCGTGT 
    GAATGCTCGT CGGGTCTAGA CGGTTTGAGG AGGAGGAGTG GGGAGAGGGA 
    GGGGGGCGGC GGCGACGATG CAGATCCGGC TGTCGCCGAG CATGAGGAGC 
    ATCACCATCT CCAGTAGCGG CATCGGCATC GGCGGCGGCA ATGGCGGCGG 
    CGGAGGCGGC GGCGGCGGCG TGGGGAGCGG GCTGCTAGAC CTCATGAAGC 
    TCAAGGCCGC CGCCCGCCAC TTCTCCTACC GCACCGTCTT CCACACCGTC 
    CTCATCCTCG CCTTCCTCCT CCCCTTCGTC TTCATCCTCA CCGCCCTCGT 
    CACCCTCGAG GGCTTCAACA AGTGCTCCTC CCTAGATTGT CTAGGCAGAC 
    GGTTAGGTCC ACGGCTTCTT GGTAGGGGCA ACGATGGCTC CATGAGGGTC 
    ATGAGGGATT TGTATAGGAT GCTTGACGAA ATAAATTCTG AAGAAGTACC 
    TGTTGATTTG AAGGTCCCAG ACTCTTTTGA TGAATTCATC TGGGACATGA 
    AGAATAATGA TTATGATTTA AGGTCATTTG CTTTTAGGCT GAAGGCAACA 
    ATGGAGAGCA TGGACAGGGA ATTGAGAACA TCAAGGTTAT CAGAGCAGTT 
    AAACAAACAC TACGCAGCAA TTGCTATTCC CAAAGGCCTT CATTGCCTTT 
    CCTTGCGTCT AACTGATGAA TACTCATCCA ATGCTCTTGC AAGGAAACAA 
    CTCCCTCCAC CTGAGTTGAT CCCTCGTCTT TCTGACAATT CCTATCTCCA 
    TTTTGTTTTA GCATCAGATA ACATCCTTGC AGCCTCAGTT GTGGTCAGTT 
    CAACTATTAG GTCATCATTA AAACCTGGCA GGATAGTTTT CCATGTCATC 
    ACTGACAAGA AGACCTATCC TGCTATGCAC TCATGGTTTG CTTTGAATAC 
    TCTTTCTCCT GCCATTGTTG AGGTGAAAGG TGTTCACCAA TTTGATTGGT 
    TAACAAGAGA AAACGTGCCA GTTCTTGAAG CTATAGAAAC TCAGCACACT 
    GTCAGAAGTC GTTTCCATGG AAATCACCTT GCAAGAAATA GTGCAGGTGA 
    TAGCCCAAGG GTTTTTGCTG CCAAGCTGCA GGCAGGGAGT CCAACATATA 
    CTTCAGTGCT CAATCATATT CGAATATACT TGCCTGAGTT GTTCCCAAAC 
    CTCAACAAAG TTGTATTTCT TGATGATGAC GTTGTTGTCC AGCGGGACTT 
    GTCATCACTT TGGGATATTG ATCTAGGTGG GAAGGTAAAT GGAGCTGTTG 
    AGACCTGCAG AGGTGGAGAT ACTTGGGTGA TGTCCAAGAG GTTCAGAAAT 
    TATTTCAATT TCTCCCATCC CCTCATTGCC AATAACTTCG ACCCTTCGGA 
    GTGTGCATGG GCATATGGCA TGAATATATT TGACCTGAGT GCATGGAGAA 
    AGACATCCAT TAAAGATAAA TACCACCATT GGGTCAGGGA GAATCTGAGC 
    TCAAACTTCA CACTTTGGAG GCTTGGAACA TTACCACCTG GCCTTATAGC 
    ATTTAGAGGT CATGTTCATC CTATTGATCC ATCATGGCAT CTTTTAGGCT 
    TGGGGTATCA GGAAAAGACA GATATCCCCA GTGTTCAGAA AGCAGCAGTC 
    ATACATTACA ATGGGCAAAG TAAACCATGG CTGGATATTG GTTTTAAGCA 
    TCTCCAGCCA TTTTGGACAA GACATGTGAA CTACTCGAAT GAGTTCATAA 
    GAAACTGTCA TATAATGGAG CCCCAGTTAT AGATTGGCTA GATAAACCAT 
    TCTATAAATA TTGGCGTAAA TTATGGAATT AAATTCATTA TTTTGGAGAC 
    CAATACCAGA TAGTCCAGAA GGATACCCAC GAAATGCTCT CTGAACAGTA 
    ACCCGGAGCT GGTACACGAG CGGATGGAGA ATATTTAATG AACACAAAGG 
    AAATATTTTC TTCCTATACA CTAGGATCTC TTTCCCTTTA TTTATTCCAT 
    TTGTATCATA GCTCATGAAA TTACAGTATT GTTTAGGATG GTTCTTTTGT 
    ATTTATTGGA GCAATATAAA TTGCCTGATT TGGCGGGATT GATGGTAGGC 
    CCATCGTTAT TGTAATTGTT GGGTATCCAG TTCACCACAT GAACAACATG 
    GGCCAGATTT TGATTTTGC

    Gene models with high sequence identity

    1. AT3G01040.1 [+] show detail - galacturonosyltransferase 13
      E-value: 0; Score: 767.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Nucleotide-diphospho-sugar transferases 5e-59
    Gene3D no description 1.2e-58
    HMMPfam Glycosyl transferase, family 8 1.5e-65

    See the detailed result >

    AT3G01040.1

    Model type
    Protein coding
    Short Description
    galacturonosyltransferase 13
    Curator Summary
    Encodes a protein with putative galacturonosyltransferase activity.
    Computational Description
    galacturonosyltransferase 13 (GAUT13); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 14 (TAIR:AT5G15470.1); Has 1671 Blast hits to 1663 proteins in 335 species: Archae - 0; Bacteria - 670; Metazoa - 145; Fungi - 4; Plants - 816; Viruses - 2; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR