R90353

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
T1	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90353

Determination of introduced cDNA(s)

J023013J02 - Rice Full-length cDNAs - Original: J023013J02

full reading [+] show sequence

TGGTCTTTTG CAGGCTTGCA GGTTGAGGAG CACTAGACGC TGTGGAGTGG 
AGGGAGGCGG AGATGGCGGA ACAGTAGCCA CCATGAGCTC CTCCCACTCC 
CATGCTCATG GCGGCCTCCT CCCCACCTCC CGCCGCCGCT AGCAGCAGCG 
GGCGACTCGC CAGGGTGCGC CTCCACGACC TGGCGCCCTA CGATGGCGCC 
GCGACCCCCG CCTACGGCCG CGCCGTCCAT GCCCTCTCCG CCTCCCTCAC 
CCGCCACGGC GCCGCCCTCC TCGACCTCCC CGACGCCCAC GCCGCCATCC 
TCCGCTGCGC CCTCCAATCC GCTCGCGCCT TCTTCCGCGC CAACGACCAA 
CCCGCCTTCT ACCTCTACCG CGCAGGGGGC AGCGCAAGTA GGACATCCGA 
TGACGGCGGC GGCGACCTGG TCCCTGCTTG CATGGACGAC GCCTTCAGGT 
GTTTCGGTGA GGCTGCCCGC GCTGCTCTCT CTGCGATTGC TCGCCATCTC 
CGACTTCGTA CCAATGTATT CGACCACTTG CTCGATGATA CTCCATTGCC 
TGTTAATGAG GTCTCATCCT CGGAGTTGCT GGTGGCTTAT TCCAACCAAC 
GCCTCCACAC CGATCATGCT TCTTCTACTG CCTGTCTCGG CTCTTCAGTG 
CCTCAAGTTG ACAGGGGCTT CCTTGTGCTC ATTGCTTCTG ATCATCCAGG 
AATTGAGGTT TGTGACCCAA ATGGCCAATG GTACCTAGCA GATGGCATTT 
CAGGGCCTGG TGACCTGTTG CTTCTGACTG GAAGGGCACT TAGCCATGTT 
ACTGCTGGTT TGCGCCCAAC TTCTCGCTAC AGGATCACAA ATGAGACTAG 
AGCATCACTC ACCTTTAGGC TAATGCCACA TGCCAATGCT ATACTGGATT 
GCTCTCCTAT TGCAGCAGCT GGGCACTGCG TACCCCAGAT GTACCAACCC 
ATATCTGCAA GCCAATTTAT GGATGACTTG TGTGCTGAAG AACGTGCTGT 
TTCGAATCAT TCGGAAGCAC CTTCTGAATC TCAGGGCAGC TTCATTAGTG 
AACCATCTCT CAGAAGTGTC CTATCAGATC CATTGTCTGG GGCTTTTCTT 
GAGGATGCTA TGGTTCTGTT ATGTGGACAC TCTTTCGGTG GCCTCATGCT 
GAAGAAAGTC ATTGAAATGG CAAGATGCAC CATTTGCAAT GGAGAAGTTG 
ATCCGGCCAC CCTGTTTCCT AATCTCGCTT TAAGAGCAGT AGCTACAGTG 
GTGAAGATGG AAGATGATAG GAGACTCTTT CATAATGCTG CTCTTCGCAA 
ACACAGGAAA GAGGTGACCG AACGTATGGA TGTGCTGAAG AGCACTGGAG 
GTAGCAGAGG CAATGGTGAG CTGGTGTTGG ATGCTGAAAA CCCTACATCA 
CCCAGGGGTG TGCAGTATCC ATTTGTAGTG GGCGAGAGGG TCCTGATCAT 
GGGAAACAGA AGGACGCCTG ATAAATTTGT TGGGAAGGAG GCAGTCATCA 
CATCGCAGTG CTTGAATGGC TGGTATCTTG TGAAGGCGGT TGATAGCGGG 
GAAAGCATAC GGCTGCAGTA TCGGTCGCTG AAGAAAGTGT CGGAGCTGCA 
GCTTCAGTCA GAGATGAGGT TGCAGCCACT CACCTTCCTG CACAACAAAT 
ACCCCAGTAG TGGCAGCTGA GTTGATTGAC TATCATCAGT CTTAAAACAA 
AAAAAAAAGA AAGGAGAAGC ATATACTGTA GCAGAATAGT CATGAGGCAT 
GCATCGCCAT CAAGCGTGTT TTGTTGTAGT AATACTAATA AAAAGGTCAG 
TTAGAAAAGT GTGGTGATAG TTAATCTGGT GATGATATGA AAAGGGTCTA 
TCCTATTGGA AGGAGAAATG TCATGTGGGG GTTATTAAAA GGACATAAAG 
AGTTTGCTAG GAAGTTCCAA ATTCCTAGCG GTGGATGCAG CGGGTCAGCC 
AAGCCAAACC ACAAACCAAA CTGACTTTTC TACTGCACTG CAACGCACCA 
GTAGATGCCA GTTGGTAATT CTTGATCCAA GCGTGAAAAT GTGTAACTGG 
ACCGGCTGGG CACTTGCAGA AAAAGTCGAT AAATGTGTTG TGTTTGCTGC 
G

Gene models with high sequence identity

AT3G19895.1 [+] show detail - RING/U-box superfamily protein
E-value: 5e-132; Score: 468.00

InterPro Scan Digest

Program	Description	E-value
superfamily	RING/U-box	2.3e-07
superfamily	Clavaminate synthase-like	6.3e-07

See the detailed result >

AT3G19895.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G12940.1); Has 120 Blast hits to 120 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link: InterPro Scan - TAIR