R90265

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90265

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90265

Determination of introduced cDNA(s)

  • J013023F20 - Rice Full-length cDNAs - Original: J013023F20

    full reading [+] show sequence

    Nucleotide sequence: J013023F20 - full reading 
    GATCTGTGTG TTTCTTCAGA GTTCTTGGCT TGGCTCCTCT GGTGTTCTTG 
    TGCTCTGGGT TTTGGAGGGA GAAGATAATA CTTGTTCATC TGCCATGGAT 
    GATGAGCAGA GGGATGGATG AGCCATGGGG TTGACTCTCT GGGTGTTCTT 
    GGTTTCTTGG CTAAGGTTAT AGGAAGGAAG TCTGAAGCTT GAGCCCTGTC 
    AGTTCTGGGG TTGGACAAGG ATTAATCTGT GAGGCTCACT CTGATTGAAG 
    CCATGGGGTC TGGGGACTGG TTCAAGACGA TCATCAGCAA GAAGAAGTCT 
    AAACGTGGCA AGTCAAAACA CGCAAAGGTT GCCGGTCAGG TACCCAATGG 
    GCCAAACTCA ACAAATCAAA AGTCTAATAA TGGTCCTTCC TCTAGTAGTG 
    ACCCTGAAGA CAATGCAGCA CTAGAGGAAT GGGCAGCTAC TCGAATTCAA 
    AATGCCTTTA GATGCTACAA GGCAAAGAAA ACTCTCAGAT GTCTCAAGGG 
    GGTTAAAAGA TTGCACATTA TTGGGCAGAC CAATCCAGTT AACAAGCAGA 
    CAGCTGCCAC ATTGAACTAC ATACAGTCTT GGAACAAGTT GCAGGCAGAG 
    ATAAGAAACC GGCGTGCCTT CATGGTCACT GAAGGGCGCA ATAGGAAGAA 
    GAAGCAAGAA AATCAAATGA AACTTGAAGC AAAACTCCAA AATTTGCAGG 
    TCGAGTGGAA TGGAGGCTCG GATACTATGG AGGAAATACT TGGGAGGATC 
    CAACAAAGGG AAGAAGCCGC AGTAAAGCGT GAACGAGCTA TGGCATATGC 
    ATTCAATCAT CAGTGGAGAG CAAGGTCTGC CACAAGTCTT GGAAACTTCA 
    ACTATGAAGT TGGCAAGGGT GGCTGGGGTT GGAGCTGGAT GGACCGATGG 
    ATAGCGGCAC GGCCATGGGA GCCCCGATCA CTGGTCCACC CCGAAAACCT 
    GAAGAAAGGA CAGGCAAAGA AGGAAAATGC CAGCACAAAC CCATCAGCTC 
    TGAAGCTGCA AGGCTCAATC AGTCTAAGCA ACAACATCAA TGATCGAAAA 
    GCCCCTAAGA AGAAGTCATC ACCATCTCCC CCTGATCAGA AGAAACCGGT 
    AGCAGCATCT CCTCCTGATC AGAAGAAACC GGTAGCACTG TCTCCTCCTG 
    ATCATAAGAA AACCGTAACA CCATCTCCTC CTGATCAAAA GAAACCGGTA 
    GCAAGGGTGC AGAAGGCAAA GGCAGCTGGT CCTCCAAAGG CAAAGCCCAA 
    GGACATGAAA GGGGGCCAAC AGAAGAAGCA ACAACAACTA GAGGTTCCTT 
    CGCTCAGTGT GTAAAATTCG CCGCGAAATG GTTACCGCTC ATTGTATGAT 
    ACATCTTGTG AAGTTCACTT TTGTTTTTTC TCCCCACTCT TTGTTTCTCT 
    CTTCTTTTTG TTTTTTACAG TGACATGGAA CAAACAAGTG ACCAATGTAG 
    AATGTATTTG GTTGAGAGGT TGCACACATC TGATGAGAGT GGCTTTGATT 
    AGGACTAGGA TTCATTGTTG TGCTGTTGTA ATATGACTTG TGATGTGCCT 
    GCCTATATGT TTGAATTGAA GGGAAGGGTT TTGTTGGAAC AACAGTTAAA 
    AGTTCCTTCT TTTGTT

    Gene models with high sequence identity

    1. AT2G33990.1 [+] show detail - IQ-domain 9
      E-value: 1e-54; Score: 211.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan IQ calmodulin-binding region 7.474
    Coil coiled-coil 0

    See the detailed result >

    AT2G33990.1

    Model type
    Protein coding
    Short Description
    IQ-domain 9
    Computational Description
    IQ-domain 9 (iqd9); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 10 (TAIR:AT3G15050.1); Has 664 Blast hits to 663 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 658; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR