K38834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38834

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38834

Determination of introduced cDNA(s)

J023003K12 - Rice Full-length cDNAs - Original: J023003K12

full reading [+] show sequence

GACTAGTTTA GTTTTTGCGA AGTGTTCTTC TCCAAATCAC CTGAGAAATA 
GGTGTCGATT TTCAGAACTA GCGTGCTAGC CACTAGTGTG GCCATGGAAG 
TGGTTTCTTC CAGCCACTCC TGCTTGGCAT TTAACCGAAC ACCTAGCAGT 
GCTTGGAGGT TTCCGGGGAA TGGTCTTGGT CCAGGGCATG CAAAGCTCAC 
TCGGCCAAGA AGTGCAATTC TTTGTGTGCG GTCAGGGACA GCTTCGAATC 
CTGCTGATTC TGGGAAAGTT CATGCGAGCC ATGGGTTCTA TGTAAGTGAT 
GTCGATGCAG CTCTCCAAGG GATCCCGAAG AAAGTCGGTG AGATCGAGAA 
GATGATCATT CCGAGCTTGC CAGAAGGACC TGAAAGCTCT CTAATTAGTA 
CTGGTTTCTG GGAATGGAAG CCGAAGCTGA GTGTATATTA TGAAAAGTCT 
GGCATAGACA ATAGCAAGGC ACCGTCTGTG CTCTTTCTAC CAGGTTTTGG 
AGTGGGAACG TTCCATTTTG AGAAGCAATT GAAGGATCTT GGCCGTGATT 
ACAAAGTATG GACAATGGAT TTTCTAGGGC AGGGCATGTC GTTGCCATGT 
GAAGATCCTG CTCCTAAGAG CACATCAGGA GAGCTAGATG AGGACACATA 
TTGGGGTTTT GGACAAGAAT TACAACCATG GGCGGAGGAG TTGGTGTATT 
CGATAGATTT GTGGCGTGAC CAAGTTCAGC ATTTTATTGA AGAGGTTATT 
GGTGAACCAG TATATATTGT GGGGAACTCT CTGGGAGGTT TTGTTTCTCT 
ATATCTTGCT GCATCCTGTC CACACCTTGT AAAGGGTGTC ACATTACTTA 
ATGCAACCCC ATTTTGGGGA TTCCTTCCCA ACCCTGCTAC ATCTCCTCGC 
TTGTCGAAGA TTTTTCCATG GGCTGGGACA TTTCCACTTC CATCGTTTGT 
GAGGAAACTT ACTGAAACAG TGTGGCAGAA AATAAGTGAT CCAAGAAGTA 
TACAGGGCAT ACTCAAGCAA GTATATGCTG ACCACTCAAC GAATGTGGAC 
ATGGTGTTCT CGCGTATTAT AGAGACAACA CAACATCCAG CAGCTGCTGC 
ATCATTTGCA TCCATTATGT GTGCTCCAAA GGGACAAATA TCCTTCGAAG 
AAGCTCTATC TAGGTGCCAA AGGCAGGGTA TTCCCATATC TCTTATGTAT 
GGGAGAGAAG ATCCTTGGGT TAGACCTATT TGGGGTATTA AAGTGAAACA 
GCAGGTGCCA GAATCACCGT ATTACGAAAT CAGTCCTGCT GGTCACTGCC 
CTCATGATGA GGTTCCTGAG GTTCCAGGAA AAAGCCTTGC CTGGTGGATC 
ACTGGGCGCC TTCAGGCATC GTAACCCCTT GGGGCGGTGC GAGGGTACCT 
CTCTTCCTCG GCAAGTTTTC TCTAGGTGAA AACCACATCT TTGTTAGAAG 
GTGGGCGATG GTGCCGTCCT TGATGGCGTG ACCTCCGTGG TGGCATCGTT 
TTCGAAGTCT CGTCTTTGTG GTGTTGTCGT GGGCCTAGCG GCGATCAGCC 
ACGCATAGCG AGGGTCGTTT TGGTGCTAGG CTTCACTCAG TGGTTTGTGC 
TTTTGTGGTT AGCGTGTGGT TTTAGGACGT GCCCTGTGGT GCGCATCCGT 
CCTCGACAGC TTTCTGTTGT GTTTTTTCTT GTAACTTTTT CTCCTTAATG 
CATTCGGATG GCCTCCTTTG GCCTTCCCGG CGAAAAAAAG TGGCAAGACA 
TGTTCTATGT TTTTTTTCTT TCCTTTTTTA ATCTGTAGAG TTAGTTCAAT 
TTTCTGCATT TATATAAAGA TATATGTTTC

Gene models with high sequence identity

AT5G13800.2 [+] show detail - pheophytinase
E-value: 1e-137; Score: 487.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ALPHA/BETA HYDROLASE	2.9e-58
HMMPanther	ALPHA/BETA HYDROLASE RELATED	2.9e-58
superfamily	alpha/beta-Hydrolases	5.4e-41
Gene3D	no description	5.9e-35
HMMPfam	Alpha/beta hydrolase fold-1	1.3e-07

See the detailed result >

AT5G13800.2

Model type: Protein coding
Short Description: pheophytinase
Curator Summary: Encodes a pheophytinase that is involved in chlorophyll breakdown.
Computational Description: pheophytinase (PPH); FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.2); Has 3014 Blast hits to 3012 proteins in 698 species: Archae - 17; Bacteria - 1970; Metazoa - 110; Fungi - 4; Plants - 264; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).
Link: InterPro Scan - TAIR