K38720

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38720

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38720

Determination of introduced cDNA(s)

  • J033145O03 - Rice Full-length cDNAs - Original: J033145O03

    full reading [+] show sequence

    Nucleotide sequence: J033145O03 - full reading 
    GGACGTCGTT CCAAATCTGT AGTAGCACCT CCTTCCCCAA GAATCGCGCG 
    CGCGCGCCTG CCTCGTCGCC GGCGGCCATG GCGCTCCTCC TCCGCCACTC 
    TCCCAAGTTG CGAAGAGCGC ATGCTATCCT CGGATGCGAG CGTGGGACTG 
    TTGTTCGTCA CTTCTCATCC AGCACTTGCT CCTCTCTTGT AAAGGAAGAT 
    ACTGTATCAA GTTCCAACCT TCATCCAGAG TAAAAAAAAA ATTGGAGGAT 
    CAGATTTTTC CCATGACAGG CAGTCTGGAA AAGAGCTTCA GAATTTCAAG 
    GTCTCACCGC AAGAAGCAAG TAGAGCCTCC AATTTCATGA GAGCATCCAA 
    ATATGGAATG CCAATTACTG CTAATGGGGT ACATAGTTTG TTCTCATGTG 
    GGCAGGTAGT ACCGTCTAGG TGTTTTTCAA GTGGAGCAGA TTTGCCTCCA 
    CATCAGGAAA TCGGAATGCC TTCACTCTCC CCTACCATGA CTGAGGGAAA 
    CATTGCAAGG TGGGTGAAGA AAGAAGGAGA TAAAGTCTCA CCTGGTGAAG 
    TTCTTTGTGA AGTAGAGACT GATAAAGCGA CAGTGGAGAT GGAATGCATG 
    GAGGAAGGCT ACCTTGCTAA AATTATCCAT GGAGATGGTG CCAAAGAAAT 
    TAAAGTTGGT GAGATTATTG CCGTAACCGT GGAAGAAGAG GAAGACATCG 
    GCAAATTTAA GGATTATAAG GCTCCATCAT CTGCTGAATC TGCAGCTCCA 
    GCCGAATCGA AGCCCCAATC TGAGCCCACA GAACCAAAAA AGGAGAAAGA 
    GCAGCCCAAG GCTCCTGAGC CAAAGGCTAC AAAGACAGAA GAATCTTTTC 
    TTTCAGAGGA TCGCACATTC TCCAGTCCAA TTGCAAGGAA ATTGGCAGAA 
    GACAACAATG TACCACTGTC AAGCATAAAA GGTACTGGCC CCGATGGGCG 
    AATTTTGAAG GCAGATATTG AGGATTACTT GGCTTCTGTG GCCAAGGGTG 
    CCAAGAAGGA AACAGCAGCA GCTCCTGGAC TAGGCTATGT GGATCTTCCT 
    AATACGCAAA TAAGGAAGGT TACTGCAAAC CGCCTGCTGC ACTCCAAGCA 
    AACCATTCCT CACTACTATC TGACAGTTGA TACTCGTGTT GACAAACTTA 
    TTAAGTTGCG AAGTGAGTTG AATCCTCTGC AGGATACCTC TGGTGGCAAG 
    AAGATATCCA TAAATGATCT TGTTATCAAG GCCGCAGCAT TGGCTCTTCG 
    TAATGTTCCT GAGTGTAATA GCTCTTGGAT GAATGATTTT ATTCGCCAAT 
    ACCACAATGT GAACATCAAT GTTGCTGTAC AAACTGAGGA TGGCTTGTTT 
    GTTCCCGTAA TAAGGGATGC TGACAAGAAG GGCCTAGCCA CTATCGCTGA 
    TGAGGTGAAG CAACTGGCTC AGAGAGCAAG GGACAACAGC CTTAAGCCAG 
    AGGATTATGA GGTATAGGCC GAATATATAT TTGATTCGAT AGTATTTTTC 
    CTTTGACAAT TTGGATGCAA TGTCTTGCAG GGTGGCACTT TCACTGTGTC 
    AAACTTGGGA GGCCCTTTTG GAATTAAGCA ATTCTGTGCC ATCGTAAATC 
    CTCCACAATC AGCAATTTTG GCTATTGGCT CAGCTGAGAA GAGGGTGATC 
    CCTGGAGCTG AGGGTCAGTT TGAAGTTGGT TCGTTTATGT CAGCAACATT 
    GAGCTGCGAC CACCGGGTCA TTGACGGTGC CATTGGTGCA GAATGGATGA 
    AGGCGTTCAA GGGCTACATC GAGAATCCAA CGACCATGTT GCTGTAAATG 
    AGGATGACGG GGAGAGTTAT TTTTTGTAGG TTTTCACAAA TAAGGCTCAC 
    AATAACGGTG TCTTCGTTCT TTTCATTGTT TTACACTGTA TAACCTCGGC 
    ACGGCCCCAT GAGGTCTTGA AACCAAAGAG CAAACATACA TAGGAGTCAG 
    CACAGCATCC CTTGTCATCT CTGTAAATGC ATTTTTATCC TGAGCTAAAT 
    CACAATTTAC AGCGCGTAGT GGAAGTTTGA TGTTCTCTTG TTTAAGACAA 
    ATTTTCTACT CCAGGAGTTA AACCTTTTTC ATTTTTTCTG TCCAAGGTGA 
    TAAATGATAA GGAGAAATGT GGCCTGTGGG TAAGGAAGTC TTTTTTTGGA 
    ATGGAAGCCC CATGTACTTG GCTCTTTTTC GAAACGTTTT TGGCTGTGC

    Gene models with high sequence identity

    1. AT3G13930.1 [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
      E-value: 7e-170; Score: 594.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT 4.1e-192
    HMMPanther DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE- 4.1e-192
    HMMPanther DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT 9.1e-40
    HMMPanther DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE- 9.1e-40
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0
    Gene3D no description 1.5e-30
    Gene3D E3 binding 5.5e-08
    Gene3D no description 8.5e-40
    Gene3D no description 9.5e-26
    ProfileScan Biotin/lipoyl attachment 14.977
    HMMPfam 2-oxoacid dehydrogenase acyltransferase, catalytic domain 1e-43
    HMMPfam Biotin/lipoyl attachment 7.5e-19
    HMMPfam E3 binding 2.5e-15
    HMMPfam 2-oxoacid dehydrogenase acyltransferase, catalytic domain 3.3e-32
    superfamily CoA-dependent acyltransferases 1.5e-44
    superfamily Single hybrid motif 3.5e-29
    superfamily E3 binding 4.3e-12
    superfamily CoA-dependent acyltransferases 1.6e-29

    See the detailed result >

    AT3G13930.1

    Model type
    Protein coding
    Short Description
    Dihydrolipoamide acetyltransferase, long form protein
    Computational Description
    Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, copper ion binding; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT1G54220.2); Has 21425 Blast hits to 19790 proteins in 2331 species: Archae - 106; Bacteria - 12026; Metazoa - 730; Fungi - 474; Plants - 369; Viruses - 0; Other Eukaryotes - 7720 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR