K38017

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38017

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38017

Determination of introduced cDNA(s)

J023075G11 - Rice Full-length cDNAs - Original: J023075G11

full reading [+] show sequence

GATCCAAATC CAACGTCCGC CTAAAGAAAA ACACGCACAC ACTTCTTCTG 
CTTCCCTCCC CTTGTTTCCG CTCCACTTCC CTTCCAAGCA AGAAAACCGA 
GGCTTCAGCT TAGCTAGGAC CGACCGATCC GATGTGCGGC GGTGCAATCA 
TCTACGACTA CATCCCGGCG CGCCGCCGGT TGTGCGCCTC CGACTTCTGG 
CCCGACGCCG ACGACTCCGA CCCCCACACC CCCGCTCCCG AGAAACCGCC 
GCGCGCGAAG AGGGAGCGGA AGAACCAGTA CCGCGGGATC AGGCAGCGGC 
CGTGGGGGAA GTGGGCGGCG GAGATCCGCG ACCCGGTGAA GGGGGTGCGC 
GTCTGGCTCG GCACCTACCC GACCGCCGAG GCCGCCGCGC GGGCCTACGA 
CCGCGCCGCG CGCCGCATCA GGGGCGCCAA GGCGAAGGTC AACTTCCCCA 
ACGACTTCGG CGCCGCCCCC GCGCCGGCCG CGGCGGCGGC GAAGGCCGTC 
CCTCGCGTCG CGCCCACGCC GGCCGTGCTC CCGCCGCCCA AGATGGAGGC 
GGTGTCCGAG GGCGCCGGCG CCTGCTCCTC CGACGAGGTC AAGGAGCTGT 
CCGAGGAGCT GCTCGCGTAC GAGAACTACA TGAGCTTCCT CGGCATCCCC 
TACATGGAGG GCGGCGCCGC CTCCGCCGCC GGCGCCGAGG AAGCCGCGGC 
GCCCGCCGGG CTCTGGACCT TCGAAGACTA CGAGCTGCCG TCGCTAGCGC 
TCTAGTAAAA ATGTCACAAT AAAAATGACA TGTATGTGAA AAAATTTTTC 
CCTACCCGTA GTAAGTAACC AGTGTCTTTT TTTACCGTAC TCTATGCGTT 
ATTTTTGTTG AAATTAATCC ATTGTTGAAG TTGTAACTGT GCATGGTCGG 
CGCCAGTCT

Gene models with high sequence identity

AT2G47520.1 [+] show detail - Integrase-type DNA-binding superfamily protein
E-value: 2e-21; Score: 99.80

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	9.9e-37
superfamily	DNA-binding, integrase-type	8.2e-24
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	4e-11
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	4e-11
Coil	coiled-coil	0
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	24.487
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1e-16
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	9.2e-24

See the detailed result >

AT2G47520.1

Model type: Protein coding
Short Description: Integrase-type DNA-binding superfamily protein
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description: HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 (HRE2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6285 Blast hits to 5826 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6266; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR