K36415

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36415

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36415

Determination of introduced cDNA(s)

  • J023083A20 - Rice Full-length cDNAs - Original: J023083A20

    full reading [+] show sequence

    Nucleotide sequence: J023083A20 - full reading 
    GACGCACCAC TAGCACCGTA TCCATATATA TACAACGCAC TTACCCACCC 
    ATGAGTCGAC GAGTTTATCT CTTTATCGTA CGTCTAAAGA TTAAAAAACA 
    TTAGTTTTGT ATTAAAAACA TACTCACCTA TATGTAACAT TTGATTATTT 
    ATGATCACTA TGATTTAATC CTTACAAATT GAAACACGTG GTACACTCTA 
    ATTAAACTGG TACTTTAGTT GTAGGAAGTT ATCAAAAGTC AACAACACAA 
    AAATACGGTC CGCTTTTCAG GAGCTCTTTA GTTATGGGTA AACAATTTGT 
    ACAGTACGGA GGGGAAACAT GTGTACATAT GAAATATAAA ACCATTTGTT 
    ACCACCGTTA ATCCACCTTT TTTTATGTTT ACCTTGATCC AACAAAAGAA 
    ATATTCCAGG ACCTAACATA TATTAGAATA GAGAGGGTTT CAGGTCGGCA 
    AAACAACACA GTACACTGAT TTCGCAACTA ACACCATCTA GTTGCCGTGT 
    GGGGGCGGCG CAGGGACGTG ACGCGGGAGG TGGCGGACGC GATGTCGAGG 
    CTGGCCAGGG CGCTGGCGCG CGTGCTGGCG GAGAGCCTCC TGGGCCACGC 
    CACCGGCGAG CGATTCCCGG AGGGGTGCGA CGACGCGACG TGCTTCCTCC 
    GGCTGAACCG CTACCCGCCG TGCCCCTTCC CACCGGACGA CGCCTTCGGC 
    CTGGTCCCGC ACACCGACAG CGACTTCCTC ACCGTGCTCT GCCAGGACCA 
    CGTCGGCGGC CTGCAGCTCA TGAAGGGCTC CCGCTGGGTC GCCGTCAAGC 
    CCATCCCCGG CGCCCTCATC GTCAACATCG GAGACCTTTT TCAGGTACAC 
    CCATTAACTC CAACGTTGTA TAAACATCTC AACACAAATC CCTAAATACC 
    ATATATGCAT AATGGTACTA AGATGGAAGA GAGAAAACAA AAGAGAAAAA 
    GAGGATGAGT CACCCCCTCA TAAAGAGAAA AATATGGCGC TGATTGGATG 
    AAAAGTGCAT GAAACAAATA GTTTTCTTGT ATTGGAGCTA GTATATTAGA 
    GATAATGTGT AGTATATTTT ACCTCCTAAT AATTAATTAG TTGATGATGT 
    GGATAATATT AAGGGTGACA ATCATCCCTA CTATAAAACT TGCTGTTACA 
    CCTAATCATG CATACCACTC GTGCTATATA TAGTGCTATA TACCCAATCA 
    ACAACTACTC CATATTCTAC GAAGCTTTGC ACGGGAGAGG AGAAAAAAAT 
    GTGCATAATT ATTTTGGACA AGGCGAGTAC AATACAGGCT CTCGTGGCTG 
    GCCGGCCGGC TGGCTGGCTG GCTGGCTGCG GCCGGCAATG CTTTCCAACC 
    TGTAGAGTCA AAGCCTGCAT CTGCCTATGG TAGGTGGTTT GTCTGTCTGC 
    GTGAAAAAGT ACAGATTCCG TGAACATATT CCGGGCCTCC GGCTCTCCAA 
    AAGGCGGACG TTGCAGCGTC ACGCTTTGCG TACTTGTGCT TGTGGGCATG 
    TCGTGCCTAT CTATCAGCAG CCTTGCCTGC GTGTATCGCT GTACCGCCGC 
    TAGCGAAAAA AAAAAAAGGC TGCGGATTCC GCTATGATCA AGGGACAGAA 
    AAACATCGTG CAAAAGGGCT AGTAGAATGG AAAGATCGAC TTGTCAGTTA 
    CACTCACATG GTACATTTGC GACTTTTGCT AGGGAACTTG ATCGGTCACG 
    ATAACATAGT ACTACTACTA TTGTACTACT ATATCGTGCT ATAACTAGAG 
    TCTAAAAGAA ATCTCTCAAT CTATGCCTAT GCCCAACAAC ACGTTCTAAG 
    AAAATATCTA CGTTAGTCAG AAAATAGTAC ATAAATCTAA AGCATATACT 
    TACATCTTGG GAGGACCAAA TTATAACAGT TTAGGCACCA TTTGAATGTG 
    ATAAGCTTAA GCTTATTACA GCACGAAAAT GTAGTGGATG ATTAAAGCAT 
    GATTAATTAC TAAGTATTAA CCATTGTAAA CTTATTTTTT AAAAAAAAAA 
    TCTATATATT TTTTTTCATG AAACATACAA ATGTGAATCA TTAAATTAAG 
    CATCAGTGGA CAGTGTATGC GAGGCCGTAC TAAACTTATA CTCTACCACG 
    TTGAACCAAA TTAGGGCGGT TCAATTCAAT TCCTGACGTT TTTCCGACTC 
    TACTTCTATT TTGAAGGCGT GGAGCAACAA CAGGTACAAG AGCGTGGAGC 
    ACAGGGTGAT GACGAACGCG ACGACGGAGA GATACTCCGT CGCCTACTTC 
    CTCTGCCCGT CGTACGACTC GCCCATCGGC ACGTGCAGGG AGCCTTCCCC 
    TTACAAGGCG TTCACCTTCG GGGAGTACAG GCGAAGGGTG CAGGAAGACG 
    TCAAGAAGAC GGGGAAGAAG ACTGGCCTCA GTAATTTCCT CGTATGAGGC 
    GCACACAAAT TCAGTGGCCG GCCAGTTTCA GTTCCGTTCT GTGTATCATC 
    AGTAAATGTA CAATTATTAA TGACTAAGAG TGCAGTACAT TAATTAATTA 
    ATTAATTAGT TTATTGTAGC TTAGTTTGAC GGTGTACAAG TACTGGTAGG 
    AGATTGCCGG TATATATGTA CGTAGGAAAT AAGATAAGGG ATCCATGTAC 
    AGTTTATGTA CGGCCTTCGA TCCCTTGTCC TTTGGTTTGA ATTATGATGT 
    TTCTT

    Gene models with high sequence identity

    1. AT4G21200.1 [+] show detail - gibberellin 2-oxidase 8
      E-value: 3e-26; Score: 117.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF51197 8.30001403791589e-17
    Gene3D G3DSA:2.60.120.330 3.29999802154459e-13
    HMMPanther PTHR10209 1.20000117458134e-21
    HMMPanther PTHR10209:SF7 1.20000117458134e-21
    HMMPfam Oxoglutarate/iron-dependent oxygenase 2.8e-05
    Gene3D no description 6.8e-28
    HMMPfam Oxoglutarate/iron-dependent oxygenase 4.7e-14
    superfamily Clavaminate synthase-like 4.2e-31
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 2.9e-39

    See the detailed result >

    AT4G21200.1

    Model type
    Protein coding
    Short Description
    gibberellin 2-oxidase 8
    Curator Summary
    Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins.
    Computational Description
    gibberellin 2-oxidase 8 (GA2OX8); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 7 (TAIR:AT1G50960.1); Has 8586 Blast hits to 8547 proteins in 1007 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 1020; Plants - 4926; Viruses - 0; Other Eukaryotes - 1392 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR