K36340

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36340

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36340

Determination of introduced cDNA(s)

  • J033116J07 - Rice Full-length cDNAs - Original: J033116J07

    full reading [+] show sequence

    Nucleotide sequence: J033116J07 - full reading 
    GTCAGAGAAT ACTTGCGAGC TCCGATCTCT TCTTCTTCTT CGTGAGCTCT 
    CACCAAACCA ACCCCAACCA CTGCCCTCCT CCTGCCGCGA TCCGCTCCTG 
    CTCTCCAGCT CAGGGAATCC ACCTCCACCC GCAGAGACCA ACCAGCAGCT 
    GTCCGTCCTC TGCGGCGGCG GCGGCGGCGG CGAGATGGGG CAAGCTCTGC 
    GGCGGCTCTT CGACGCCTTC TTCTCCACCA GGGAGATGCG GGTTGTGATG 
    CTTGGTTTGG ATGCAGCTGG CAAGACAACA ATTTTGTATA GGCTGCACAT 
    GGGAGAAGTT CTTTCAACGG TTCCTACAGT AGGTTTTAAC GTAGAGAAGG 
    TTCAGTACAA GAATGTGGTA TTTACTGTGT GGGATGTTGG CGGACAAGAA 
    AAGCTCAGGC CATTATGGAA GATGTACCTC AGCAATTCTG ATGCACTGAT 
    CTACGTTGTT GATTCATTGG ACAGAGAAAG GATTATAGAC GCCAGACAAG 
    AATTTCAGAC CATTATCAAG GACCCACTGA TGGCAAACAG CATAATCTTA 
    GTATTTGCAA ACAAACAGGA CCTGAGAGGT GCGATGAGCC CAGATGAGGT 
    GAGCGAGGGG CTAGGCCTGC ACGACCTCAG GAACAGGATA TGGCATATAC 
    AAGGGACATG CGCTCTCCGT GGTGAGGGAC TCTACGATGG ACTTGATTGG 
    CTCGCATCCA CCCTGAAGCA ATTGCAAGAG ACAGGCCATG CAACTTCAGT 
    CGCCGGCCCT TCCATCTGAT TTCGCTAGAG AAGAGATGCC AATGCCTCAA 
    CTAGTCAACC AATCTGATGC TCCTGGGCAG TCATCCTTCT GTTCATCCAA 
    TGAGAATATT GAGTTCCTTG GTGCATGCGT GATCTTCGCT ATCGGCTTTC 
    TTGGTGTGGC TGCTCGCAGA GGAGGGCATT CAATCGCTGT GTTCATATGA 
    GCAAACTCAT TTGACAGTAA CTTGCGGCAT AATTTTCTCC TAAAATGTTT 
    GTAAAGTGTT TGGACGTCTG TGTACTTTGT TGTAGTGAAC AAGAGCTGAG 
    TAGTTTGCAC GGACCGTGCT TGTGTATACT TGATGGCACG TCCACATGAT 
    TGTTTGCTGA TTGCCTATCA ATAAGACGGT TGGATGATGG ATGTTGTTTG 
    GTGAT

    Gene models with high sequence identity

    1. AT5G17060.1 [+] show detail - ADP-ribosylation factor B1B
      E-value: 6e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart ADP-ribosylation factor 4.9e-92
    HMMSmart Small GTPase SAR1-type 1.8e-15
    ProfileScan ARF 22.965
    Gene3D no description 3.4e-60
    HMMTigr Small GTP-binding protein 1.4e-18
    superfamily P-loop containing nucleoside triphosphate hyd 6.1e-52
    FPrintScan ARF/SAR superfamily 3.2e-18
    FPrintScan ARF/SAR superfamily 3.2e-18
    FPrintScan ARF/SAR superfamily 3.2e-18
    FPrintScan ARF/SAR superfamily 3.2e-18
    HMMPfam ARF/SAR superfamily 2.4e-68
    HMMPanther ADP-RIBOSYLATION FACTOR, ARF 1.9e-117
    HMMPanther ARF/SAR superfamily 1.9e-117

    See the detailed result >

    AT5G17060.1

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor B1B
    Curator Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.
    Computational Description
    ADP-ribosylation factor B1B (ARFB1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor B1C (TAIR:AT3G03120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR