K36143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36143

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36143

Determination of introduced cDNA(s)

  • J013109E14 - Rice Full-length cDNAs - Original: J013109E14

    full reading [+] show sequence

    Nucleotide sequence: J013109E14 - full reading
    GACCCATCGA TAAAAGCCGC CCCAAAACGG GCAACACCTC GACGGCGCCA 
    TCGCCACCAT CACCCACCTC CTCTCCTCAC CTTCCCTTCC CCGCGAGCTC
    CAACGCCCAC AAACCCTCAC CCTCCCGCAA AAACCCTAAT CCCACCTCCT
    CCTCCTCCCC CCATGGCGGC CAAGGCGGCG GCGCTCTCCT CCTCCCCGTT
    CGTCTCCTCC CGCCGCCTCT CCTCCCCCGC GGCGTCTCTC CGCGCCCGCA
    CGCCGAGGTG CGTGATGGGG AGCGAGCAGG TGAGGGTGGT GGTGGAGGAG
    GAAGGGAAGA CGAAGAAGAG GATGGGGGTG GCGGAGCCGA GGAGCGCGCC
    CCCCGCGGTG TGGACGCCGC GGGCGCCCGC GCAGGAGGCG AGGCTCGCCG
    CGCTGCGCAC CGATGGGCGG GATTCCAGGT TGAAGATCTT CTCCGGCACG
    GCCAATCGCC CCCTCGCGCA GGAAATTGCT TCTTACTTGG GTGTAGACCT
    GGGTAAGGTC CTCATCAAGC GTTTTGCCGA TGGGGAAATC TACGTGCAGC
    TGCAGGAGAG TGTGAGGGGT TGCGATGTGT TCTTGGTGCA GCCCACCTGC
    TCCCCTGTTA ATGAAAACCT TATGGAGCTT TTTGTCATGA TCGACGCATG
    TCGGCGGGCG TCGGCGAGGT CTATTACTGT TGTCATTCCA TACTTTGGGT
    ATGCCAGAGC TGACAGAAAG GCTCAAGGAC GTGAGGCCAT TACTGCCAAA
    CTTTCTGCTA ATTTACTTAC AGAAGCTGGG AGTGATCGTG TAATTGTATG
    TGATATTCAT TCCACTCAAG CATTGGGATA CTTCGATATT CCTGTGGATC
    ATATACATGG ACAGCCTGTG ATTCTGGATT ACCTTGCCAG TAAGACAATA
    TCTAAGGATC TTGTGGTGGT TTCTCCTGAT GTGGGTGGTG TTGTCAGAGC
    ACGTGCATTT GCTAAGAAAT TATCTGATGC CCCTTTAGCT ATCGTTGATA
    AGAGAAGACA GGGTCACAAC ATGTCAGAGG TCATGCACTT AATTGGTGAT
    GTGAAGGGTA AGGTCGCCAT CATGGTTGAT GATATGATAG ACACAGCAGG
    AACAATTACT AGTGCAGCTG CTTTGTTAAA ACAGGAGGGA GCAGAGGCTG
    TCTATGCTTG TAGCACACAT GCTGTCTTCA GGTTTGGCAG TTGGTTTATT
    GTAACATCCA TGATCCATGT AATAGTATTG ATTCATTGGC TTGTTGCGAA
    GGAACCATGT TATGGCATGA TTAGGCAGAT TGGCTTTATG TTTGATCAAT
    ATAAAAATGA CAGGGTAGAG CAATAATTTT ACTAGATTCC ACTTGAGCAC
    ACCAATCACT TAGTGCTAGT AAGTGGGAGT CTGGAAAAGA GGTTGGCTTT
    AATCTAGTTG AGTGCGGATC TGGTTCTTGT TGACTCTATT TCATTAGTAG
    TCATGAATCT GTGCCACACA TATCAGCATA TGTTTTTCTG GCTATTTTGA
    TTTAGGAAGG GACCTCAAGT CCTCAATTGA AGTCTTGAAT TTTATTAGCA
    TCAACATGCA TGATGTCTTT TTACATGGTA CCGCACAGTA ATTTGACTTC
    AAAATAATAG CAGGATGTGT TGCCACTTAC TTCATTTGCA AAAATTGTTG
    TCCTTTTGTA TTCCTGCACT ATTTTGTAGG CATAAAAGTA AGTCGTTTAC
    CACACCTACT TTTTCCCACT AGCACTGTCT TTGCAGCCCT CCTGCGATTG
    AAAGGCTCTC TGGAGGCATC TTTGAGGAAG TTATTGTGAC AAACTCCATT
    CTGCTGCCAG AGCACAAATG CTTCCCCCAG TTGACAGTGC TCTCAATGGC
    GAACCTTGTG GCAGAAACAA TCTGGCATGT TCATCGCGAT GGCTCTGTGA
    GCAGCATATT TCAATAGCGG CGGATGCTAT GGCTACCGCG ATGCCACATT
    TGTGTGGTGT GGAGAAGGCA CCTGATGGTT GTGCCCATCT GCGTAGGAAT
    CAATTTTGGT GACAAGACTA AATAAGGATA TCCATTGTAT CAAGTATAAG
    AGAATCAGTC TCGTGCAGTT CTTTCATCCT TTAGCAACTG TTGAGGGACA
    AGGAAAAGAT TTGTGCTGTT CACTGATATA TTGGAAGTAA TGCAAATGAT
    GCTTAGCTCT GACG

    Gene models with high sequence identity

    1. AT2G44530.2 [+] show detail - Phosphoribosyltransferase family protein
      E-value: 9e-109; Score: 391.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1,2,3,4 1.4e-161
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1.4e-161
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1,2,3,4 1.4e-22
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1.4e-22
    HMMPfam Phosphoribosyltransferase 4.1e-13
    PatternScan Phosphoribosyl pyrophosphate synthetase, conserved site 0
    superfamily PRTase-like 8.5e-54
    superfamily PRTase-like 1.8e-37
    superfamily PRTase-like 3.3e-07
    HMMTigr Phosphoribosyl pyrophosphokinase 2.3e-102
    Gene3D no description 2.2e-66
    Gene3D no description 0.00033

    See the detailed result >

    AT2G44530.2

    Model type
    Protein coding
    Short Description
    Phosphoribosyltransferase family protein
    Computational Description
    Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11359 Blast hits to 11120 proteins in 2784 species: Archae - 259; Bacteria - 6102; Metazoa - 636; Fungi - 683; Plants - 217; Viruses - 13; Other Eukaryotes - 3449 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR