K34804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34804

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34804

Determination of introduced cDNA(s)

  • J023041O20 - Rice Full-length cDNAs - Original: J023041O20

    full reading [+] show sequence

    Nucleotide sequence: J023041O20 - full reading 
    GACTCGCATC GCATCGACCT CCTCTCGCCT TCTACGTACC TTGCCAATGG 
    CGGTCTCCAC CTCCAGGCGC GGCGGCGGCG TGCTTGCGGC GGTGGTGACG 
    GCGGTGGCGG CGCTGGCGAT GCTGGGCGGG GTGGCGTGGG GCGGCAACCC 
    GGGGTTCACG TGCGGGCCGG CGTCGGCGCA GAAGGGGTTC GCGTTCTGCA 
    ACGCGGCGCT GCCGGCGGAG CAGCGGGCGG CGGACCTGGT GGCGAGGCTG 
    ACGACGGCGG AGAAGGTGGG GCAGCTCGGG GACCAGGCGC CCGGGGTGCC 
    GAGGCTGGGG ATCCCGGTGT ACAAGTGGTG GTCGGAGGCG CTGCACGGGC 
    TGGCCATCTC CGGGAAGGGC ATCCACTTCG GCAACGGCCC CGCGCGCACC 
    GCCACCAGCT TCCCGCAGGT CATCCACACC GCCGCCGCCT TCGACGACGG 
    CCTCTGGTTC CGCATCGGCC AGGCGATCGG CAAAGAGGGT CGGGCGTTCT 
    ACAACCTGGG GCAAGCAGAG GGTCTGGCCA TGTGGTCCCC CAACGTGAAC 
    ATCTTTAGGG ACCCACGGTG GGGCCGTGGC CAGGAGACCC CCGGCGAGGA 
    CCCCGCCACG GCGAGCAAGT ACGGCGCCGC CTTCGTCAAG GGCCTGCAGG 
    GGAGCTCGTT GACAAACCTC CAGACCTCCG CGTGCTGCAA GCACATCACC 
    GCCTACGACA TCGAGGAGTG GAAGGGCGTC TCACGCTACA ACTTCAATGC 
    AAAGGTGACA CCGCAAGATC TAGCGGACAC GTACAACCCG CCGTTTAGGA 
    GCTGTGTGGT GGATGGGAAG GCGAGCTGCA TCATGTGTGC CTACACCCTC 
    ATCAATGGCG TCCCGGCGTG TGCTAGTTCT GACCTCCTCA CCAAGACCGT 
    CAGGGGAGAA TGGAAGTTAG ATGGTTACAC GGCGTCGGAC TGCGACGCGG 
    TCGCCATCCT TCACAAATCG GAACACTTCA CGAGGACGGC GGAGGAAGCC 
    GTGGCCGTCG CCCTCAAGGC CGGGTTGGAC ATAAACTGCG GCGTGTACAT 
    GCAGCAGAAC GCGGCGTCGG CGCTGCAGCA GGGGAAGATG ACGGAGAAGG 
    ACGTGGACAA GGCCCTCAAG AACCTCTTCG CCATCCGGAT GCGGCTGGGC 
    CACTTCGACG GCGACCCAAG GGGCAACAAG CTGTACGGCC GCCTCAGCGC 
    CGCCGACGTC TGCACGCCGG TGCACAAGGC CCTCGCCCTC GAGGCCGCCA 
    GGCGCGGCGT CGTCCTGCTC AAGAACGACG CCCGCCTCCT CCCGCTCCGC 
    GCCCCCACCG TCGCCTCCGC TGCCGTCATC GGCCACAACG CCAACGACAT 
    CCTCGCCCTC CTCGGCAACT ACTACGGCCT CCCCTGCGAG ACCACCACGC 
    CGTTCGGAGG CATCCAGAAG TACGTCAAGA GCGCCAAGTT CCTCCCCGGC 
    TGCAGCTCCG CCGCCTGCGA CGTCGCCGCC ACCGACCAGG CCACCGCGCT 
    GGCCAAGTCC TCCGACTACG TCTTCCTCGT CATGGGGCTC AGCCAGAAGC 
    AGGAGCAGGA AGGCCTCGAC AGGACGAGCC TGCTGCTCCC CGGCAAGCAG 
    CAGGCCCTCA TCACCGCCGT CGCCACCGCG TCGAAGCGCC CGGTCATCCT 
    CATCCTCCTC ACCGGCGGCC CGGTGGACAT CACGTTCGCG CAGACCAACC 
    CCAAGATCGG CGCCATCCTG TGGGCGGGGT ACCCCGGCCA GGCCGGCGGT 
    CAGGCCATCG CCGACGTGCT CTTCGGCGAG TTCAACCCCA GCGGCAAGCT 
    GCCGGTGACA TGGTACCCGG AGGAGTTCAC CAAGTTCACC ATGACCGACA 
    TGCGGATGCG CCCCGACCCG GCCACCGGCT ACCCCGGCCG GAGCTACCGA 
    TTCTACAAGG GCAAGACCGT CTACAAGTTC GGGTACGGCC TCAGCTACTC 
    CAAGTTCGCT TGCCGCATCG TCTCCGGCGC CGGCAACTCG TCATCCTACG 
    GCAAGGCGGC GCTCGCTGGC CTTAGGGCAG CAACCACACC AGAAGGCGAC 
    GCCGTCTACC GCGTCGACGA GATCGGCGAC GACCGGTGCG AGCGGCTCGG 
    GTTCCCGGTC ATGGTGGAGG TGCAGAACCA TGGCCCCATG GATGGCAAGC 
    ACACCGTGCT GATGTTCGTC CGGTGGTCGA GCACGGATGG CGGCCGGCCG 
    GTGAGGCAGC TGATCGGGTT CAGGAACCAG CATCTCAAGG TAGGGGAGAA 
    GAAGAAGTTG AAGATGGAGA TCAGCCCATG CGAGCACTTG AGCAGGGCGA 
    GGGTGGACGG CGAGAAGGTG ATCGACAGAG GATCGCATTT CCTCATGGTT 
    GAGGAGGATG AGTTGGAGAT TAGGTTCCAG GATTGAGTTT TAGATGGAAG 
    ATTATTTCCT TGTTTTTTAA ATTTTGGTTT TGTTTATGTC TTTTGAGATG 
    ATACATAAAA GGAGATCCAA TGGATTGATA TTAAATTAAT AGAGAAGGAA 
    AAGTTCTTTT GTCGG

    Gene models with high sequence identity

    1. AT1G78060.1 [+] show detail - Glycosyl hydrolase family protein
      E-value: 0; Score: 822.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 1.8e-98
    superfamily Glycoside hydrolase, family 3, C-terminal 9.3e-32
    HMMPfam Glycoside hydrolase, family 3, C-terminal 8.4e-52
    HMMPfam Glycoside hydrolase, family 3, N-terminal 4.5e-51
    Gene3D Glycoside hydrolase, family 3, N-terminal 1.6e-85
    Gene3D no description 6.7e-52

    See the detailed result >

    AT1G78060.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family protein
    Computational Description
    Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G10560.1); Has 9183 Blast hits to 7917 proteins in 1177 species: Archae - 63; Bacteria - 5533; Metazoa - 16; Fungi - 1604; Plants - 525; Viruses - 0; Other Eukaryotes - 1442 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR