K33818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33818

Determination of introduced cDNA(s)

  • J023038C19 - Rice Full-length cDNAs - Original: J023038C19

    full reading [+] show sequence

    Nucleotide sequence: J023038C19 - full reading 
    GGCGGAATAA TAACCTTTTT TTTTCTTTTT CCAAGCGCCC TTCAAACCCA 
    TCTCCTCTCC CCTCTCCCTC CCAATTCGAT GCAGCCGCGG TAGCAATTCG 
    CATCGCCCCG CCCTCCTCGC CGCGCGGATT CGCTCGCCGC CCCCGCCACC 
    GCACCCCCAT GGACGCCTCC GCCGGATCCG GCAATGCCTC CGGTGGCGCC 
    GGCGCCGGCG CGTCCGCGTG CTGCTACTAC TCCCTGCTCG GCATCCGGAA 
    GAACGCGTCC GCCACCGACG TGCGCGCCGC CTACCGGAGG CTCGCCATGA 
    AGTGGCACCC GGACCGGTGC GTGAGCGACC CCGGCGAGGC CAATCGGCGG 
    TTCCAGCGGA TCCAAGAGGC GTACTCCGTT CTGTCCGACA AGGGGAAGCG 
    AGCCATGTAC GACGCCGGGC TGTTCGATCC CCTCGACGAC GACGACCAGG 
    ATTTCTCCGA TTTCATGCAG GAGATGCTGG TGATGATGGA TAACGTGAAA 
    AACGAGAAGC CGGACACACT CGAGGACCTG CAGAAGATGC TGCAAGACAT 
    CGTCAGCGGC GACGGCGGAA GCCGCGGCGG CGGCGTCGGT GGCCGCGTGC 
    CGTCGGACGG CACACGGAGG ACGCGCGTCG CGCCCTACCC GGCGCAGTCG 
    CGCAGGTGAC CGGCGCGCCG GTGTACGAGA CGTGCACACG CCTCTAAGTG 
    ATGAAAAGAG AGACAAGCAG AAGAAGAGAG GAAGCAAACG GGAAAGAAAA 
    ACCAATAAAA TTTGGCAGAA TTTGTTTCCC TTTTTTTTAG GTCATCAGAT 
    GATTGACTCC GTTTAGTTCG CTGGGTTGGG TTGGGTCGGG TGTGCCGTTC 
    GATTCCGGCC GCGTCACCCA AGAATTGGTG CGTGCGTGGC CAAAGATTCC 
    AATATCTTGT CGACATTTCG TCCTGAATTT CACTCTCTTG TTGATGTGTT 
    CACC

    Gene models with high sequence identity

    1. AT1G56300.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
      E-value: 2e-28; Score: 123.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DNAJ-RELATED 9.2e-27
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 9.2e-27
    ProfileScan Heat shock protein DnaJ, N-terminal 19.353
    PatternScan Heat shock protein DnaJ, conserved site 0
    Gene3D Heat shock protein DnaJ, N-terminal 7.3e-20
    HMMPfam Heat shock protein DnaJ, N-terminal 5.3e-23
    superfamily Heat shock protein DnaJ, N-terminal 1.5e-21
    HMMSmart Heat shock protein DnaJ, N-terminal 6.9e-23

    See the detailed result >

    AT1G56300.1

    Model type
    Protein coding
    Short Description
    Chaperone DnaJ-domain superfamily protein
    Computational Description
    Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, response to cyclopentenone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G71000.1); Has 23532 Blast hits to 23527 proteins in 3290 species: Archae - 175; Bacteria - 9754; Metazoa - 3953; Fungi - 2136; Plants - 2298; Viruses - 10; Other Eukaryotes - 5206 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR