K31130

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31130

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31130

Determination of introduced cDNA(s)

  • J023117P14 - Rice Full-length cDNAs - Original: J023117P14

    full reading [+] show sequence

    Nucleotide sequence: J023117P14 - full reading 
    GGTTTCCTGC AAACAAAAAA AAATCCCTAT CCATTTTTAT CTGTTAGCGC 
    ACTTGTTCTC TGAATAAGTT TAGCTGCTCA CCTTACTACT TGGTGTAGTT 
    CTTAACATAT CTGAACCAAA CATGGAGCAG CAACCTCAGA AGAAGATGGT 
    TGTGTCCAAG AAGATCATGA AGGTTGGGCC ATGGGGCGGC ACCGGAGGGA 
    GCCCCTGGGA CGACGGCGGT CACACCGGCG TTCGTAGCAT CACCCTGTCG 
    TACGACCGGT GCATCGACTC CATCGCCGTC GAGTATGACC GGAACGGCGT 
    CGCCGTCGCC GGCGAGCGGC ACGGCGGCGC CGGCGGCAAC CAGACCACCC 
    AGGTGCACAC CCAATACCAT CTGCACCTTG TAATGTTCTT GGCACAGCCA 
    TAGCTGAGGG CCTGTTTAGA TCCCTGGCAA AAATTTTCAA CATATCACAT 
    CAAATATTTA AACACATGTA TGAAGTATTA AATATAAACG AAAAAAATAA 
    CTAATTATAC AAATTTCGTG TAAATTGCGA GACGAATCTT TTAACCCTAA 
    TTGTTTCATT ATTAGATAAT GTGGTGCTAC AATAAATATT TACTAATTAC 
    GGATTAATTA GGCTTAATAA ATTCGTCTCG CGGTTTACAA ACGAAATCTG 
    TAATTTGCTT TATTATTATT ATACGTTTAA TACTTCAAAT GTGTATCCGT 
    ATATCCGATG AGACATGCAA AAATTTTACA TCCATGTATC TAAATACCCC 
    CTGAGTCTGT TTGGCTGGGA CGTAGATCAA GCTGGGCTTC CCGGAGGAGT 
    ACCTGACGGC GGTGAGCGGG CACTACGCGG CGGTGGCGCA GGGCGGCGCG 
    CCGGCGGTGA TAAGGTGGCT GGCGTTCAGG ACCAACCGGA GGGAGTACGG 
    GCCGTTAGGC GGCGGCGCGG CGGAGGGCAC GCCGTTCGCG TTCCCGGTGG 
    ACGGCGGCGC CATCGTCGGG TTCTGGGGGA GGAGCGGCCG GCAGCTCGAC 
    GCCGTCGGCC TGCACGTCGC GCCGCTGCGG CCGGAGACCA TGTACGAGAA 
    GGCGCACAAG CTCGGGCTCA TGGCGTACCG CTCGGTCCGG CAACGCTTCG 
    GGCCTCAGCA GCAGCAGCAG GTGCAAGTGC AACATCACAA CAGCTTTGCA 
    CTCTCACAGA GTGGCAGAAC TTTCTAGAGC TTCCGCTTGT CAGAAACTCA 
    CAATGCAAAA TCATCTCCCT CACGGGTTCA CATTCTCTAC CATAATAACA 
    TTATCATTGC

    Gene models with high sequence identity

    1. AT1G73040.1 [+] show detail - Mannose-binding lectin superfamily protein
      E-value: 4e-18; Score: 89.70

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mannose-binding lectin 3.89999861795218e-21
    HMMPfam Mannose-binding lectin 2.2e-15
    Gene3D Mannose-binding lectin 4.60000044330908e-18
    HMMPfam Mannose-binding lectin 7.3e-07
    Gene3D Mannose-binding lectin 2.9e-09
    superfamily Mannose-binding lectin 1.5e-14

    See the detailed result >

    AT1G73040.1

    Model type
    Protein coding
    Short Description
    Mannose-binding lectin superfamily protein
    Computational Description
    Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G19715.2); Has 1381 Blast hits to 855 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 1366; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR