K30633

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30633

Determination of introduced cDNA(s)

J013116D12 - Rice Full-length cDNAs - Original: J013116D12

full reading [+] show sequence

GAGTCAGTAT ACTCTCACTC TGTCTCCTCC CCCGCGTCGG TCGCTTCGCT 
TCTACTGGAG GAGAGCAGAG GTGGTGGTTG GTGAGAGAGG ATGCGCGGCG 
GCGGCGGCGG CGGCGGCGGC GGCGGCGAGG AGGCCGGCCA GAAGCTGAAG 
AGCATGGACG TCGACAAGCT GGAGAACGGC GGCGACAAGC CCGCCCTCAA 
GTACCACGGC TGGAGGGCCA TGCCCTTCAT CATAGGGAAC GAGACGTTCG 
AGAAGCTGGG GACGCTGGGG ACGTCGGCGA ACCTGCTGGT GTACCTGACG 
CAGGTGTTCC ACATGCGGAG CGTGGACGCG GCGACGCTGC TCAACGGCCT 
CAACGGCACC ACCAGCCTCG CCCCCATCAT CGGCGCCTTC CTCTCCGACG 
CCTACCTCGG CCGCTACCTC GCCCTCGCCA TCGCCTCCGT CGCCTCCCTC 
ATCGGCATGT TCTTGCTGAC GATGACGGCC GCCGCGGACG GGCTGCACCC 
GGCGGAGTGC GGGGTGGGGG AGACGTGCTC GAAGGCGACG TCGGGGCAGT 
TCGCGGTGCT GTTCATGTCG TTCGCGTTCC TGGTGCTGGG GTCGGCGGGG 
ATCCGGCCGT GCAGCATGCC GTTCGGCGCC GACCAGTTCG ACCCCCACAC 
GGAGTCCGGC AAGCGCGGCA TCAACAGCTT CTTCAACTGG TACTACTTCA 
CCTTCACCTC CGCCATGCTC GTCTCCGCCA CCGTCATCAT CTACGTCCAG 
AGCAACGTCA GCTGGCCCAT CGGCCTCGGC ATCCCCACCG CGCTCATGCT 
CCTCGCCTGC GTCCTCTTCT TCATGGGCAC CAGGCTCTAC GTCCGCGTCA 
CCCCCGAGGG CTCCCCCTTC ACCAGCATCG TCCAGGTGTT CGCCGCCGCG 
GCGAGGAAGC GGTCGCTCAA GCAGCCCAAG GACCCCAAGC AGAACCCGTG 
GAGGCTGTGC AGCGTGCAGC AGGTGGAGGA GGTGAAGTGC CTCATCCGCA 
TCGTGCCCGT CTGGTCCACG GGGATCATCT ACTACGTCGC CGTCGTGCAG 
CAGTCGACCT ACGTGGTGTT GTCCGCGCTG CAGTCCGACC GACACCTCGG 
CCGGAGCTTC CAGATCCCCG CGGCGTCGTT CACGGTGTTC GCCATGCTGG 
CGCAGACGCT GTGGATCCCC ATCTACGACC GCCTCCTCGT GCCGCGCCTC 
CGCAGGGTCA CGGGCAAGGA CGAGGGCCTC ACCCTCCTGC AGGGCAGGGG 
ATCGGGATCG CGCTGTCGAC GGTGGCGATG GTGATGTCGG CCGTGGTGGA 
GGACCGGAGG CGGCACATCG CGCTGACGCA GCCGACGCTG GGGACGACCA 
TCACCGGGGG CGCCATCTCG GCCATGTCCA GCCTGTGGAT GGTGCCGCAG 
CTCATGGTGC TGGGGCTCTC GGAGGCGTTC AACCTCATCA GCCAGATCGA 
GTTCTACTAC AAGGAGATCC CGGAGCACAT GCGGAGCGTG GCCGGCGCGC 
TCGCCTTCTG CAACCTGGCG CTGGGGAACT ACCTCAGTGG GTTCCTCGTC 
ACCATCGTGC ACCGGACCAC CGGCGCCGGG AGCAACTGGC TGGCGCAGGA 
CCTCAACAAG GGGAGGCTCG ACCTCTTCTA CTGGATGATC GCCGGCATCG 
GCATCTTCAA CATCATCTAC TTCATGATCT GCGCCAAGTG GTACAGGTTC 
AAGGGGGCAG CCGCCAACTG AGATGCAAGT GAAGTGAAGT TTGTTCGTTT 
GGGTGGTTAA TTAATTATGT CAATGGCAGA TAATTAATTG GTGGAGTGCT 
TTTAGCTGGG TTTTTTTTTT CTGCCTCATC ATTTCTCTCT TGTATTTTTG 
TATCTGTGGT GTCTTGAATT ATAAAATCTA TAGGATTAAG TGGG

Gene models with high sequence identity

AT5G62680.1 [+] show detail - Major facilitator superfamily protein
E-value: 5e-148; Score: 174.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oligopeptide transporter	2.5e-35
HMMPfam	Oligopeptide transporter	2.7e-15
HMMPfam	Oligopeptide transporter	2.5e-05
superfamily	Major facilitator superfamily, general substrate transporter	1.5e-10
HMMPanther	NITRATE TRANSPORTER (NRT1)	1.7e-69
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	1.7e-69
HMMPanther	NITRATE TRANSPORTER (NRT1)	6e-206
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	6e-206

See the detailed result >

AT5G62680.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to karrikin; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G47960.1); Has 3769 Blast hits to 3614 proteins in 562 species: Archae - 0; Bacteria - 609; Metazoa - 518; Fungi - 366; Plants - 2162; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link: InterPro Scan - TAIR