K29541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29541

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29541

Determination of introduced cDNA(s)

  • J033061B10 - Rice Full-length cDNAs - Original: J033061B10

    full reading [+] show sequence

    Nucleotide sequence: J033061B10 - full reading 
    GGCGGCGCCG CGCCGTCGCC GGGCGGCGCG GGCGGCCTCC CGAACGGCCG 
    CTTCTTCACC GTGGGGCTCG TCACCGCCTG GTACTCCTCC AACATCGGCG 
    TCCTCCTCCT CAACAAGTAC CTCCTCAGCA ACTACGGCTT CAAGTACCCA 
    ATCTTCCTCA CCATGTGCCA CATGTCCGCC TGCGCCCTCC TCTCCTACGC 
    CGCCATCGCC TGGCTCCGCG TCGTCCCCAT GCAGCTCGTC CGCTCCCGCG 
    TCCAGCTCGC CAAGATCGCC GCCCTCAGCC TCGTCTTCTG CGGCTCCGTC 
    GTCTCCGGCA ACGTCTCGCT CCGCTACCTC CCCGTCTCCT TCAACCAGGC 
    CGTCGGCGCC ACCACCCCCT TCTTCACCGC CGTCTTCGCC TACATCATGA 
    CCGTCAAGAG GGAGTCCTGG GTCACCTACC TCACCCTCGT CCCCGTCGTC 
    ACCGGCGTCA TGATCGCCAG CGGAGGAGAG CCTAGCTTTC ATCTGTTTGG 
    ATTCATCATG TGCATTGGGG CCACTGCTGC AAGGGCATTG AAGACGGTGT 
    TGCAAGGAAT CCTCCTTTCA TCCGAGGGGG AGAAGCTTAA TTCTATGAAT 
    TTGCTTTTAT ACATGGCTCC AATTGCTGTT ATTCTCTTGC TCCCTGCTAC 
    CATCTTCATG GAGGACAACG TTGTTGGCAT TACAATAGAA CTGGCCAAAA 
    AGGACACCAC GATTGTTTGG TTGCTGCTGT TCAATTCCTG TTTGGCATAT 
    TTTGTCAATT TGACCAATTT CTTGGTGACT AAGCATACTA GTGCATTGAC 
    TCTACAGGTC CTAGGTAACG CGAAAGGTGC TGTGGCAGTT GTTGTCTCAA 
    TTCTAATATT CAGGAATCCC GTATCTGTAA CCGGAATGCT CGGTTACACT 
    CTTACAGTTA TAGGCGTAAT TCTTTACAGT GAATCCAAAA AACGCAACAA 
    GCCCTGAATA TTTTAGAATG CCGTAAATAT GGCTGTCCTT TCTCATTCCG 
    GTGGATGCCC AGGGCTAATA TATGACGGGG AACTACATCG GGGACAATTG 
    CAACAAATCC TGCACTGTAT GGAGCCTGAT TGGATAGCAA GGATAGAAGT 
    CCAATAATAC ATGTAGTTTG CCCATGGGAT CTGGGAGGCA TTTTGTTTTG 
    CTAATGGAAA TGATCAATAG AATATTTTTT TTTTTGTGTT TAGAGAACTG 
    TGGCTCACGT TGCCAACATT GGTTAATACG GTTAGTTCGT GGAAATTGTT 
    TGAGTCATTC ATCGGTTATT GTAAGTTCAT GTTCCCCCAT TTTGTTTTTT 
    CTCTGAAGAT TGCCTGTACC AAACTTTGCT CCAGGACCCC CTAATATATT 
    ATGACAGTGA ATTTAATCCC

    Gene models with high sequence identity

    1. AT3G11320.1 [+] show detail - Nucleotide-sugar transporter family protein
      E-value: 1e-145; Score: 513.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 4.2e-34
    HMMPanther SOLUTE CARRIER FAMILY 35 1.1e-91
    superfamily Multidrug resistance efflux transporter EmrE 6.5e-07
    superfamily Multidrug resistance efflux transporter EmrE 6.5e-05

    See the detailed result >

    AT3G11320.1

    Model type
    Protein coding
    Short Description
    Nucleotide-sugar transporter family protein
    Computational Description
    Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G05820.1); Has 3089 Blast hits to 3084 proteins in 315 species: Archae - 10; Bacteria - 135; Metazoa - 742; Fungi - 470; Plants - 1357; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR