K29439

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29439

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29439

Determination of introduced cDNA(s)

  • J033106C13 - Rice Full-length cDNAs - Original: J033106C13

    full reading [+] show sequence

    Nucleotide sequence: J033106C13 - full reading 
    GGCGCTCTCC GTCGCTTCGC CTCTCTCCCC GGCTCCCCCA AACCCCAAAC 
    CCCAGCTCCC GTCTCCGTCT GCTTCCCCGG CCGCCCGAGC TCCCCCGTAC 
    GGCCGCACCC CACCCATCCA CCCCGCCGCC GGGATGGAGC TGAGGCCCGG 
    GATGTCGGCC CTCGTCACGG GCGGCGGCTC CGGCATCGGG AAAGCACTTT 
    GCATTGCTCT TGCACAGAAG GGTCTATTTG TGACAGTTGT TGATTTCTCT 
    GAAGAAAATG GAAGAGAAGC CGCTTCATTA GTTCAAAATG AAAATAAAAA 
    GTTTCATGGA GATCTTAAAG TTCCAAGTGC TATGTTTATT AAATGTGATG 
    TTACTAATGC AGGTGATCTT TCTGCTGCCT TTGGAAAACA TGTGGACACA 
    TATGGTGGAC TAGATATTTG CATCAATTGT GCTGGAATTG CCATCAAGAC 
    ACTAGTTTAT GATGATAGAT CTGATGGAAC TAGCACATGG AGGCATGCTG 
    TAAATGTGAA CCTTGTTGCT GTTATTGATG GTACTCGCAT TGCAAGTCAA 
    ATTATGCGAT CTGGGAAGAA GCCTGGTGTC ATAATAAATA TTGGTTCAGC 
    CGCAGGCCTT TATCCTATGA ACTTTGATCC CATATATAGT GGAACAAAAG 
    GTGCATATAC AATCACATAT ATAATTCTTA TTTTTTGGGC AGAAGATTGC 
    TGTTGCAATG AAAGTCCAAC TTGGATTATA ATTTGATCAT TTATTTGTGA 
    AAAATAATAT GCATGCTAAC TGTTTATCTA GATGGTTCAA GATTCTTTGC 
    AATTACAACT TGTACATGAT CCACATGTTG ATAAAGATAT ATGGCCAACT 
    GTATTTTCCA ATATTAACTC CACATTCATT TTATATTATC AAATATGTTT 
    TTCACGCTAT GCCACTGTGA TCGCAAATAT TGTATTTCAG CTGGCGTTGT 
    TATGTTTACA AGATCACTTG CTCCATTGAA ACGCCATGGT ATACGTGTCA 
    ATGTACTCTG CCCTGAGGTA TGAATATATT ACATAACTAG AGGCAAATAT 
    GAAATATTTA TTTATTTTTG TCATTTCTGA CTCATAGTAT TCCAGCATAT 
    GTATTCTGTC CAAAACTTGT GGATTTGCTG ATATGTTTGG TAGTATATCA 
    GAATATTAAC TTGATGATGG TACAACAGAC AGCACACCCA GCTGTGCTCT 
    CTGTTACATA AGTTCTTATT ACATAGAAAT ATTACTAGAA TGATCACATA 
    AAGCTTTCCA TAGGGCCAAC TCTACTATTT CTTAGAAAAA GAAAGACGAA 
    AAGTGATTGG TCACTACTTG GATTCTCAAG GACCAGGAGC AGATATCCTT 
    ATGACCATCC GTGCACCCAT TAAAATTGCA AGCCTTATAT AACTCTCATT 
    TTTAGTTGTG GTAGAGTTGT ATGAACATGT AGTATTGTAG TTGAGCTCAC 
    AGGTAAAATT AACTAAGTGG GCAAAAGTTG ATGATAATTG CATATGAGAA 
    AAACCGTGGA TATCTGGAAA GAGTTGATAT CTGCAACTTG ATAATTTCCA 
    GATTGCAGAA TCTCCAAGTC ATAAATTCAC ATGGCTTCAA ATTTATCCTA 
    AACAAACTGT TCTATGATTC TATCATTGTC TCATTATCAA ACGCTGGATG 
    CTGTGAAGGC AATGATGCTC CATGATCATT ATCAAACATG ATCTATTTTA 
    TGGTTTGTTA TGTGCAGTTT GTTCAAACTA ATATGGCAGA GCAACTAAGT 
    CGTCGAATAA TAGATGTAAC TGGTGGATAT ATAAAGATGG AAGACATTGT 
    TAATGGTACA TTTGAACTTA TAAAAGATGA AAGCAAGGCT GGTGCTTGCC 
    TTTGGATAAC TAAACGAAGA GGGATGGAGT ACTGGCCAAC ACCAGAGGAA 
    CAAAGAAAGT ATATGCTCAA TCTTCCCAAG TCAAAAAGGA TGTTAACACA 
    AAATACCTTT TCGACTGTCC AAACTCCTGA GTTCTATGAG AAGATAGTTG 
    TTCACACACT TAGCCATAAT TTTCGCGATG CTACAAGACT TGAACGTGTG 
    CGCTTGAGAT TGCCGGTTGA ACCACACAAT GCTCTGGTCA AAATAATATA 
    CGCTGGTGTA AATGCTAGTG ATGTTAACTT CAGTGCTGGG CGTTATTTCA 
    GTGGTGGTGC TAAAGAAACT GCTGCACGCC TTCCGTTGGA TGCCGGTTTT 
    GAGGTGATGG ATGTCCTCGT ACTTCTGTGT TAAACTTTTT AAAGGATGCT 
    CAATGTTGGT TAATGTTTTT AAGATATACA ACTACCTCCT CTGCCTTTTA 
    TTTTCCCATA ATATTCCTTA GCCTTTTCTC ATGAGAAATT CTAATTTATG 
    CAGGCTGTGG GCATCGTTGC ATCTGTTGGA GATTCAGTGA ACCATATTAA 
    AGTTGGCAGT CCTGTAGCCC TTATGATTTT TGGGGCCTAT TCTGAATTTA 
    CTCAGGTTCC AGCCAAGCAT CTTCTTCCGG TGCCAAGACC AGATCCAGAG 
    GTCGTTGCTA TGCTAACATC AGGATTGACT GCTTCAATTG CCCTTGAGAA 
    GGCAGGCCAA ATGGCATCAG GGCAAGTTGT TCTAGTTACA GCTGCTGCTG 
    GTGGAACAGG ACAATTTGCT GTGCAGCTCG CAAAACTAGC AGGCAACAAG 
    GTTGTTGCCA CATGTGGTGG CAAATGTAAA GCTGCACTTC TGTCTTCCTT 
    AGGAGTTGAT AGAGTTATCA ACTACCAAAA TGAAAAGATC AAAGATGTTC 
    TGAAAAAAGA GTTTCCAAGA GGAGCAGATA TCATATATGA ATCGGTTGGT 
    GGGGAAATGT TTGACTTATG CTTGAATGCA CTTGCAGTCC ATGGACGCCT 
    TATTGTAATT GGTATGATCT CCCAGTATCA AGGAGAGCAT GGATGGAAGC 
    CACGGAACTA CACTGGACTA TGTGATAAGA TTCTTGCTAA AAGTCAAACT 
    GTGGCTGGTT TTTTCCTAAT CCAGTATGCT CACTTGTGGC AAGATCATCT 
    TGACAAACTT TTTGACCTGT ATGCCTCTGG AAAGCTAAAG GTATGCCTCG 
    AGCCTCCAAT GTAAATTTCT GTTTGGCCCT ATGCATGACT AGGGTCAAAA 
    CGAAGCTACA TCAGTAGGAC CTTTATTTGG GTGATGAGGC AGAAATCTAA 
    CGAAGATACA CAAATAACAA AAGCCTTAAA TTATTCTACC ATTTCTTGTT 
    TCTCTTCATA CTGTTCTGGC ATCCACAATC TTATGAAAAT GTAGGTATTA 
    GGCAATAAAG TATTCCCATG ACCTGGTAAT AAGCATTGTG GAAGTGGATA 
    GTAATAACAA ATACTAATAA GTAGTAAGCT TATGACCCAG TTGTAAG

    Gene models with high sequence identity

    1. AT1G49670.1 [+] show detail - ARP protein (REF)
      E-value: 3e-142; Score: 503.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Quinone oxidoreductase/zeta-crystallin, conserved site 0
    superfamily NAD(P)-binding domain 1.8e-35
    superfamily GroES-like 2.6e-06
    superfamily NAD(P)-binding domain 2.6e-45
    superfamily GroES-like 2e-09
    HMMPfam Short-chain dehydrogenase/reductase SDR 1.5e-17
    HMMPfam Alcohol dehydrogenase, zinc-binding 2.5e-28
    HMMPanther 3-OXOACYL-(ACYL CARRIER PROTEIN) REDUCTASE-RE 2.5e-32
    HMMPanther Short-chain dehydrogenase/reductase SDR 2.5e-32
    HMMPanther ALCOHOL DEHYDROGENASE 9.3e-77
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 9.3e-77
    FPrintScan Glucose/ribitol dehydrogenase 1.3e-12
    FPrintScan Glucose/ribitol dehydrogenase 1.3e-12
    FPrintScan Glucose/ribitol dehydrogenase 1.3e-12
    HMMSmart Polyketide synthase, enoylreductase 2.2e-06
    Gene3D NAD(P)-binding domain 3.1e-33
    Gene3D no description 0.00011
    Gene3D NAD(P)-binding domain 3.3e-43

    See the detailed result >

    AT1G49670.1

    Model type
    Protein coding
    Short Description
    ARP protein (REF)
    Curator Summary
    molecular function has not been defined. Was shown involved in oxidative stress tolerance.
    Computational Description
    NQR; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1); Has 139834 Blast hits to 139487 proteins in 3900 species: Archae - 1368; Bacteria - 93458; Metazoa - 6844; Fungi - 8617; Plants - 3827; Viruses - 2; Other Eukaryotes - 25718 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR