K28904

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28904

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28904

Determination of introduced cDNA(s)

J023010C03 - Rice Full-length cDNAs - Original: J023010C03

full reading [+] show sequence

GGGGTACACT CTGCAAGCCT GTGAACCCAG TAGTCCAGCA GTACTCACCA 
TGGCCGCGCT GCGACTGCCA AGAGCGCCGA CCACCGCGGC GCTCGCCGCC 
GGCGTCCCCC ACCGGTTCCC GGCACCGGAG GGGGAGCCTC CGCCGCCGCG 
CGGCCCCAAC AGGGCGCACC TCAACGCGCT GCTCACGTCG TACGGCCGCC 
GCGGCCGCCT CCGCGACGCC CAGCTCCTGT TCGACCAAAT GCCCAGCCGC 
GACGTCATCT CCTGGACCGC CCTCCTCACC GCCTACGCCG ACGGGGGAGA 
CCTCGCCTCC GCGCGCCTCG TCTTCGACGA CATGCCCCGC CGCAACGCCC 
CGTCCTGGAA CGCGCTGCTC TCCGTCTACC TCCGCGCGGC GCGCCCGCGG 
GCTGCCCACG CGCTCTTCTA CAAGATGCCG GCCAAGAACG CGGTGTCCTA 
CGGTGCCATC ATCTCGGGGC TCGCCAAGGC GGAGATGCTG CATGAGGCGG 
AGTTGGTGTA TGAGGAGATG CCATGGCAGT GGCGTGACCC AGTAGGGTCG 
AATGCGCTGA TGGCTGGGTA CTTGAGGGTC GGGGAGCTTG CCATGGCACT 
GAGGGTGTTC GAGGGAATGA CGGTGAGGGA TGTCATTTCC TGGAGCGCCA 
TGGTCGATGG CCTCTGTAAA CATGGGAGTG TGTCAGAGGC GAGGAGGGTG 
TTTGACGCCA TGCCAGAGCG GAATGTGGTG TCTTGGACTT CGATGATTCG 
GGGATATGTG AAACGTGGGA TGTGCAGAGA TGGTCTCCTC CTGTTCCTGA 
ATATGAGAAG AGAAGGTGTT CAGGTTAACA CAACGACACT CTCAGTTGCG 
CTGGATGCTT GTGCTGCGGC CAGTCTTGCC AGAGAAGGGA TTCAGATTCA 
CAATTTGATT ATATCAATGG GATTTGAGCT GGATATTTTC TTGGGTGATT 
CAATAATCAT AATGTATTCT CGTTTTGGTT GGATGGTTGA TGCAAAAAGG 
GCGTTCGACT GCATGCAGCA GAAAGACATA GTATCATGGA ACTCACTGAT 
CACAGGTTAC GTTCAGCATG ACATGGTTGA AGAAGCACAT GTGCTGTTCA 
AGTTGATGCA TCAGAAGGAT GCTGTTTCTT GGACATCAAT GGTTGTTGGG 
TTTGCTAACA GGGGTTGGAT GAGGGAATCT GTTGAACTTT TCGAGCAAAT 
GCCAGTAAAA GACGAGGTCG CTTGGACTGC GATCATTTCT AGTTTTATCA 
CAAATGGGGA CTATCTAAGT GCAGTGCGGT GGTTTTGCCG CATGTCACAA 
GAAGGATGCA AACCTAACAC AATAGCTTTC AGTTGTCTGC TGAGTGCTTT 
GGCTAGCCTG GCAATGTTGA ATCAGGGAAG GCAAGCTCAT GCATATTCGA 
TCAACATGGG ATGGGTGTTT GACTCTGCCG TTCACACTTC TTTGGTATCG 
ATGTATGCAA AATGTGGAAG GTTGGCTGAG GCTTATCATG TTTTCTCAAG 
CATTAGCAAC CCAAGCCTTA TTGCTATTAA TTCTATGATT ACAGCATTTG 
TGCAACATGG TTTCGTTGAA GATGCGCTGA AACTATTTAC CAAAATGCAA 
AATGCTGGAT ACAAGCCTAA TCATGTTACA TTTTTAGGAA TTCTGACTGG 
TTGCGCACGT GCTGGTTTTG TTCAACAAGG TTACAACTAC TTTGAATCAA 
TGAGACCAGT TTATGGTGTA GAGCCAAACC CTGAGCACTA CACATGTATG 
GTTGATCTTT TAGGTCGTGC AGGCCTCCTT GCTGAAGCAC TGGAAATGAT 
TAACTCAATG CCCCAGAATG ATCATTCTGA TGCATGGGCA GCTTTGCTCA 
GTGCTAGTAG TCTCCATTCT AATCTCGCTT TTGCAAAAAT AGCAGCACAG 
AAGCTTCTTG AGAAGGATCC TTACGATGCA ACGGCTTACA CAGTCCTGTC 
AAGGATGTTC TCCTCAGCAG GGATGGAGGA TGAAGAAATG CTAAAAGTTG 
TACAGCTATC CAACTTGGCC AGTAAGAGGC CTGGTTATAG CCTTATTATG 
CAGGATAAGG CCACTGAAAT ATAACACATA CTGAGAACCT TCTAGTTGAC 
TAGTTCTAGA TCTCTGACCG ATGAAAACAA GAATGATCAT GTTACATGGC 
ACTGCTAAAT GAGAATTAGG ATGGCATAAA AAAGATATCA CATGACTTGT 
ACATAATGCC TAAAATGTGG ATATCTGACC AGGTGCTTGG TGATATGCTG 
TTGGCCCAGA ACTCGAGATC CATTTTTCTG GCAGGTCCTT ATTTCTTATA 
GGATTAAGTT TGTCCATTTT GATGCAGCTG AGTTTTCACC CTTAACTATG 
AAATCATCTA ACTTGCACTC TTCAACTACC AAAACGGGCA CAAATAACTC 
CTTTTCACCA CAAAAAAATG TCTTATTTGG CCAGAATAAC ACTGGTGGTT 
TTAAGGGTAG GGGTTACACT GATTTTGATA GTTAAAGGGT GAACAATAGA 
TCCTTTCTTT TCTGAGGGTA ACAATTAGAT AGTATTGTAG TTCATGAATT 
TACAGTATTT GTTATTTAAG ACCTGTCATA ATCTTT

Gene models with high sequence identity

AT1G53600.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
E-value: 6e-142; Score: 502.00

InterPro Scan Digest

Program	Description	E-value
superfamily	TPR-like	2.4e-24
superfamily	TPR-like	4.4e-09
superfamily	TPR-like	1.8e-08
HMMPfam	Pentatricopeptide repeat	0.0015
HMMPfam	Pentatricopeptide repeat	0.0054
HMMPfam	Pentatricopeptide repeat	0.0096
HMMPfam	Pentatricopeptide repeat	0.00019
HMMPfam	Pentatricopeptide repeat	0.033
HMMPfam	Pentatricopeptide repeat	3.8e-07
HMMPfam	Pentatricopeptide repeat	6.5e-07
HMMPfam	Pentatricopeptide repeat	0.26
HMMPfam	Pentatricopeptide repeat	3.5e-07
HMMPfam	Pentatricopeptide repeat	9.9e-05
HMMPfam	Pentatricopeptide repeat	0.00029
HMMPfam	Pentatricopeptide repeat	0.18
HMMPfam	Pentatricopeptide repeat	6.6e-06
HMMPfam	Pentatricopeptide repeat	0.00098
HMMPanther	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	1e-184
ProfileScan	Pentatricopeptide repeat	9.898
ProfileScan	Pentatricopeptide repeat	8.703
ProfileScan	Pentatricopeptide repeat	9.219
ProfileScan	Pentatricopeptide repeat	5.393
ProfileScan	Pentatricopeptide repeat	12.222
ProfileScan	Pentatricopeptide repeat	5.141
ProfileScan	Pentatricopeptide repeat	7.574
ProfileScan	Pentatricopeptide repeat	6.939
ProfileScan	Pentatricopeptide repeat	10.402
ProfileScan	Pentatricopeptide repeat	5.941
ProfileScan	Pentatricopeptide repeat	10.972
ProfileScan	Pentatricopeptide repeat	5.514
ProfileScan	Pentatricopeptide repeat	11.378
ProfileScan	Pentatricopeptide repeat	7.805
ProfileScan	Pentatricopeptide repeat	5.7
ProfileScan	Pentatricopeptide repeat	6.774
ProfileScan	Pentatricopeptide repeat	8.736
ProfileScan	Pentatricopeptide repeat	5.853
HMMTigr	Pentatricopeptide repeat	0.77
HMMTigr	Pentatricopeptide repeat	0.27
HMMTigr	Pentatricopeptide repeat	0.87
HMMTigr	Pentatricopeptide repeat	0.097
HMMTigr	Pentatricopeptide repeat	0.0004
HMMTigr	Pentatricopeptide repeat	7.1e-08
HMMTigr	Pentatricopeptide repeat	0.15
HMMTigr	Pentatricopeptide repeat	0.0017
HMMTigr	Pentatricopeptide repeat	0.22
HMMTigr	Pentatricopeptide repeat	5.1e-07
HMMTigr	Pentatricopeptide repeat	1.2
HMMTigr	Pentatricopeptide repeat	1.1
HMMTigr	Pentatricopeptide repeat	1.3e-07
HMMTigr	Pentatricopeptide repeat	0.012
HMMTigr	Pentatricopeptide repeat	0.06

See the detailed result >

AT1G53600.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 77136 Blast hits to 22764 proteins in 1112 species: Archae - 15; Bacteria - 7068; Metazoa - 10011; Fungi - 1260; Plants - 54670; Viruses - 665; Other Eukaryotes - 3447 (source: NCBI BLink).
Link: InterPro Scan - TAIR