K28430

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28430

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28430

Determination of introduced cDNA(s)

  • J013130G18 - Rice Full-length cDNAs - Original: J013130G18

    full reading [+] show sequence

    Nucleotide sequence: J013130G18 - full reading 
    GGGGAGGAGG CGAGGAAGAA CCGAAGAAGC AGCAGAGCAG AGATCACCTG 
    CGATTGCGAG GGGAGGAGGC AGCGATGTGG CGGCGGCAAG TGGGTGCCCT 
    TCTTCTCCGG CACCGATCCA CGCCTTCCTC CACCCTCCGC CACCATCTCC 
    CCCTCCCCGT CCCCGACCAG AGCCCACCTC TCGCTTCCAA TCTTCTGCTC 
    CGCCTCTTCA CTTCTCAATC TGGAGAGGGG GGTGATGGTG CCACCAAGCC 
    CTTCATTGCT TTCGTCTTAG GGGGTCCCGG GAGTGGGAAA GGTACGCAAT 
    GTGTCCGGAT CGCTTCTGAT TTTGGGTTTG CTCATTTGAG TGCTGGTGAC 
    CTTCTACGGA GTGAAATTTC AACTGGCAGT GAGAAAGGGG AGTTGATCTT 
    AAATATAATA AAAGAAGGGA AGATTGTTCC ATCAGAGATT ACTGTTGAAC 
    TGATTAGAAA AGCTATGGAA TCGAGCGATG CTAAAAGGGT TCTTATTGAT 
    GGTTTCCCAA GGTGTGAGGA AAACAGGATC GCCTTTGAAA GAATAACTGG 
    AACAGAACCA GACCTTGTGA TTTTCTTTGA CTGCCCTGAG GATGAGATGG 
    TTAAACGTTT ACTAGGCCGT AACCAGGGAC GAGTGGATGA TAACATTGAA 
    ACAATCAAGA AGCGCCTAAA GGTGTTTGAG AGTCTAAATA TTCCTGTTGT 
    TGACTACTAC ACTTCAAGAG GAAAGGTTCA CAAGATAAAT GCAACCGGAA 
    CTGAAGAAGA AATCTTTGGA GCAGTCCACA AGCTGTTTTC CTCCTTAAGT 
    CTATTCTCTC TCATTGAGGG CATTGGGAAG CGTGCAAATG GTGGGAAAAG 
    TTTGCATCTG CAGCATGCAT GGACGACGAT TGGTCATGAT GCTTTTTCTA 
    CAGCTGCAGC CCGGCGATAG ATTAAGCGCC GGCTACTCTC TCTCTCCTGT 
    TTTCTCACTC TTCCATGTAG GATTTATCTT AGATGAATAG TACTACCGCC 
    TGCTGACTGT AACCTATTAT ACCTGCTCTT ATGCTACCCA ATTGCTTATT 
    GGTTATTCTC TAGTACCAAA CTGGCTCTGT ATGCTTGCCA GTTGCCGTGT 
    ACTTAGGATA TTTTAATCCT ACGAGTCAAA CTACTCTCTA TATGCCTCCT 
    TGTTTACAGG TCAATAAATT GAGAGATGCT ACCAAGTTGT TTTCAAGCAA 
    CATTTTGTCA TATATTAAAG CTCTCAATTA TGTCT

    Gene models with high sequence identity

    1. AT4G25280.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 5e-67; Score: 251.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 2.9e-46
    HMMTigr UMP-CMP kinase 1.5e-105
    HMMPanther UMP-CMP KINASE (UMP-CMPK) 2.9e-97
    HMMPanther Adenylate kinase 2.9e-97
    PatternScan Adenylate kinase 0
    FPrintScan Adenylate kinase 9.2e-28
    FPrintScan Adenylate kinase 9.2e-28
    FPrintScan Adenylate kinase 9.2e-28
    FPrintScan Adenylate kinase 9.2e-28
    FPrintScan Adenylate kinase 9.2e-28
    Gene3D no description 3.9e-55
    HAMAP Adenylate kinase 23.047
    HMMPfam Adenylate kinase 1.8e-46

    See the detailed result >

    AT4G25280.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G26667.3); Has 14028 Blast hits to 13841 proteins in 4915 species: Archae - 98; Bacteria - 9051; Metazoa - 1267; Fungi - 476; Plants - 454; Viruses - 0; Other Eukaryotes - 2682 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR