K27312

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27312

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27312

Determination of introduced cDNA(s)

  • J023078D08 - Rice Full-length cDNAs - Original: J023078D08

    full reading [+] show sequence

    Nucleotide sequence: J023078D08 - full reading 
    TTGGGGCACA GCAGTAGCAG CCAACGGCCG CGCCGCCACA ACATGGCGTC 
    GTTTCTTTCC CGCGCCGCCG CCGTCTCCCT CCTCGCCATC GTCCTCGTCC 
    TGACTGCCGC CACGTCCACC TCCCCTGCGG CCGCGGCCGC TCGGTTCCCG 
    GAGGAGGCGC GCCCCACGAG GTCGGGGTAC CTCAACGTCA CGTCCACCAA 
    CTCACTCTAC TTCGCCTTCT ACGAGGCCAC CGACCCGGTC ACCACGCAGC 
    CGGCCGCCGT GCCGCTCCTC GTTTGGCTCC AGGGCGGCCC CGGCTGCTCC 
    TCCCTCATCG GCAGCTTCGC CGAGCTCGGC CCCTACCTCC TCCTCGACTC 
    CACCTCCGCC CTCGCCCGCA ACGACAACCG GTGGAACCGC CGCTTCGGCG 
    TGATCTTCAT CGACAACCCG CTCGGCGCCG GTTTCAGCGC GCCTGCCTCC 
    GGCGACGACA TCCCGACCGA CGAGCGCACC ATCGCCGCGC ACCTCCTCGC 
    GGCCCTGCAG TCGTTCATGG CGCTCGATCC GGCCTTCCGC GCGCGCCCGC 
    TGTTCCTCAC CGGGGAGAGC TACGCCGGCA AGTACATCCC CGCGGCCGCG 
    TCGCACATCC TCGACGCCAA CGCCAAGCTC ACGGACGACC GTAGGGTGAA 
    CCTCCAGGGC ATCGCCATCG GCAACGGCAT GACGCACCCG GTGGCGCAGG 
    TGACCGTGCA CGCCGACCAG GCCTACTTCG CCGGGCTGAT CAACGCCGAG 
    CAGAAGGCCA AGGTCGAAGA AATGCAGGAC AAGACGGTAA GCCTGATCAA 
    ATCCAAGAAG TGGGCCGCGG CGAGGAGGGA GAGGAACAGG ATCATAGCGT 
    TCCTCAAGAA CGCCACCGGC GTCGCTACGC CGTTCAACTA CGCGCGGGAG 
    AAGGGGTACC CGACGCGGCC GCTCCGGGAC TTCCTCAACA CCGGCGAGGC 
    GAAGGCGGCG CTGGGCGCGA GGAGCGACGT GGAGTGGGCG CGCTGCAGCG 
    AGGCCGTGTC GGCGGCGCTC GCCGACGACA TCATGAGGAG CGCCAGGGGC 
    GACGTGGAGG CCGTCTTCCT GGCGCCGGAT GGCGTCCGGG TGCTGCTGTT 
    CCAGGGCGTG TTCGACCTGC ACAGCGGGCC GGCGTCCGTG GAGGCGTGGG 
    TGAGGGAGCT GGCGTGGCCT GGCCTGGGCG CGTTCCTCGC CGCGGAGCGC 
    GCCGTGTGGC GGCTCGGGGA CGAGCAGCTC GCCGGGTACG TGCAGAGGTC 
    GGGGGCGCTC GCGAATGCGG TCATCGTCGG GGCCGGGCAC ATGGCGGCCG 
    GCGACAACCG GCCGGCGGCG CAGGCGATGA TCGAGGGATG GGTGTTGCAG 
    ACGGGGCCGT TCGACGGAAG CGGTCAACGA GTCGTTGGCT CCTTATTCTG 
    ACTTACGGGT GGGCTTGATT TTGACTGAAA TAAATGCTTT TTGGTACTCG 
    T

    Gene models with high sequence identity

    1. AT1G15000.1 [+] show detail - serine carboxypeptidase-like 50
      E-value: 1e-98; Score: 357.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase S10, serine carboxypeptidase 9e-90
    Gene3D no description 1e-92
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    FPrintScan Peptidase S10, serine carboxypeptidase 3.1e-14
    FPrintScan Peptidase S10, serine carboxypeptidase 3.1e-14
    FPrintScan Peptidase S10, serine carboxypeptidase 3.1e-14
    FPrintScan Peptidase S10, serine carboxypeptidase 3.1e-14
    superfamily alpha/beta-Hydrolases 3.3e-94
    HMMPanther SERINE CARBOXYPEPTIDASE CPVL/CARBOXYPEPTIDASE 9.2e-108
    HMMPanther Peptidase S10, serine carboxypeptidase 9.2e-108

    See the detailed result >

    AT1G15000.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 50
    Computational Description
    serine carboxypeptidase-like 50 (scpl50); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 47 (TAIR:AT5G22980.1); Has 3616 Blast hits to 3489 proteins in 407 species: Archae - 0; Bacteria - 288; Metazoa - 703; Fungi - 860; Plants - 1378; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR