K23645

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23645

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23645

Determination of introduced cDNA(s)

  • J013156J19 - Rice Full-length cDNAs - Original: J013156J19

    full reading [+] show sequence

    Nucleotide sequence: J013156J19 - full reading 
    GGCTGCGTCT CCTCGAGCAG AGCAGAGCAG CGGCGTCGCC GGCGTTGCTG 
    CTCCCGCGCC GCCGCATCCT CGCTCGCCGG TGACGATCCG GAAGATTCTC 
    TCTCTGTGCC TTGAATAAAC CCTCTTAAAC CCCCCATGTC ACGCGAGCCT 
    GCGGCAGCGG CGGAGGCGGA GGACGTCGTG GCCCGTCTCG GCACCGACGA 
    GGCGACTGGG CTGACGGAGG AGGAGGCGGC GCGCCGCCTC AAGCTGTACG 
    GGCCTAACCT CGTGGTCGCC CATCACCCCC AGGTGGGTGG CAAGCTTCTT 
    GCTACACTAA AGTGCATCGT CCTGCTCTGG GGATGGGATC ACTCCTTCAC 
    CGAGTACATT AAATACGAGA TTGGATGGGA GTCATGGGAG CATCTTATCT 
    TCCCCTGCTC CAGGGAGATG TTATGTGTCA TGTTCATCAA TTTCTCGTCA 
    TGGGCGGCAT TGGCGGCTGC ACTTGTGTCC CTTGCCCTTA ACTCAGCTGG 
    TCAGACAACC TATGAACTGA TCGTTATCGT CTCCTTACTT GTGGGAAGCC 
    TGTGTGCATG CTGTGTTGCC AAGCTCCTTG CCAATCGTGC TAAGGCACCG 
    CTGGAAGCTA AAGCTTTTGC GCGAAGGACC AAGGTTCTGA GGGATGGAAT 
    ATGGAAACAT GAGGATGCGA CCAATCTTGT CCCTGGGGAT ATCATATATC 
    TCAAGTGTGG TGATATTGTG CCAGCCAATG CTTTTGTCCT CAACATGGCA 
    CAGATCGACA CCAAAACCAT CCGTCATGAA AGGAGTGTTA ACTATGTGAT 
    GGGCTCCCTT ATATACTATG GCTGGGCTGT CTCCTGTGGC GAAGGGACTG 
    CTGTTGTTAC TGTGACAGGC AATAACATCC CCATGAGCAC TCTGAAACAG 
    CTTTATCCAA AACGATTCTC TCGGCCTGGG CAGCTTAGGA AGGGTGTCAT 
    GGCTGCTGCC ACTTTTTGCT TCTGCTTAGT ACTTGTTGGC ATCACAAGTG 
    AGGCTCTTGT TAAATTCTTT TTCCATCAAA GCATAGGCAC GCTGCACAGT 
    GGCCACTTTA TGCCACTTAT TGGTCTAATA CCAATGTCGA TTCCTGCTGT 
    GCTCTACCTG GCATTGGCAT TGGACTCTCA GAGGCTTTCC AAATTGGGGG 
    TTGCCAGCCG GGGAACTTTT GCTCTTGAAG ACTTGGCTAG CATGGATGCT 
    ATGCTCTTCA ACATGACTGG CACTTTGACA TGCAACAAGC CCTATTTTGA 
    CAAGGACAAG ATTGAAGTGC TTACAGAAGG TATTGATAAA GATCATGCTG 
    TCCTGTTGGC TGCGCGGGCT TCCAAAGCAC ACAATGAACT GTATAAAGAA 
    CCGATTGATG CAGCCATTCT AGGCCTTATG GATGATCCAG AACAGGCACG 
    AGTTGGCATT AATGTTATAG AGCACCGCTC CCGTATGTTT GTTGCAATGA 
    CATTGATGTA CATGACTACT TACATCGATG AAAATGGCTC CAAGTGTTCT 
    GTGCTCAAAG GTGACCCTGC ATTGATGCTT CGTGACTGCA GTTGTAGCGA 
    AGAAGTCAGA GAGCATATAC GCAAACGTAT TGATAAGCTC GGTCTTGATG 
    GATATCAATG TATTGCTGTT GGACGTATTG TTAACTCTCG GTTGGACATC 
    ATTATTCTTC TACCTTTCAT AGATGATCTC AGAAGCGATA GTGCAGAAGC 
    TGTTGATAAT CTTACTGATA TGGGTCTGAG TGTAATAGTA CTTACAGAAA 
    GCCCAATGAC AATTACAAAG CACGTATGTG GAAGACTTGG AAAACTGGGC 
    TTAAATGTGT TACATGCTGA CTCTATGCGG GAGTTGGTAA GCAGCAAAAA 
    TGAGCTTTTC TTGAATATCA ATGGGATTTC TGATCTCTTT GTAGAATATA 
    ACCGTTATGT TATATCAAAT CTGAGAACTT ATTTTGGTCG TCGTAGTGCA 
    ATGGTTGGAT ATGAATTTTC GGATGTTGAT TCTATCCGTG AAAGCGATAT 
    TGGAATCGCA GTTGCCGATG CCACTGATAG CACCAAAAGT GAATCTGATA 
    TTGTTTTGAC TGAGCATGCC TTGCTGTCTG TTTCTTCTGC TGTTCAAGCC 
    AGTAGGGAAA TTTGTCAGAT CATGAAAGGA TGCATGGTTT ATGCTGTTTC 
    ATCAACTGTC CATGCTTTTG CTGTCCGTCT TATTTTACTC CTATGGAGAC 
    TCGAGCTACC CTGTTTCCCG ATGCTGGTGA TTGCTGCTTG CAACTACTGC 
    ACATCAACTG CAATGTTATT TGAAAGGGTG AAACCATCCC AGTCACCAGA 
    TAGTTTGAAA GCAAACAAGA TTATCGCAAC TGGTGCTGCT TTTGGAAGCT 
    ATATTGCCCT GAGTACAGTC GTTTTTTTCA TAATGACTAC TAGGACTGAC 
    TTCATATCTC ACATAATCAA AGCTAGATTG CTTGTTGGCC ATGATGAGGA 
    GATTAAATCT GCCTTATTCC TTCAAATGAG CATTGTTAAC CATGCTATTG 
    GACTTTTCGC ACATTCACGC GATGGCCACT GCTCTGGGCC TATTGTTACA 
    ATTTCTTCTG TTCTATCTCA ACTGGTGGCA ACCGTCATTG CTGTTTATGG 
    TGACGTGAAC TCTCCTCTAC CAAAGGGCAT TGGCTGGGGC TGGGCAGGAT 
    TTATCTGGCT CTACAACTTT GTCTTGCTTT TGAGCCTCAT GTTGATCTGT 
    GACCTGTGTA ACCTTGCAAA GTTCAACATA TTTGGGATAA CCTGCAGGAG 
    GCTGTTCACT GGTTGGACCG AGTGGATGGA GAGGTGCAGG AGGCTGCTCA 
    ACAGGGGTAA AACGTGGATG GAGATGTTGA CCTTAACTGC TATCTCAGGC 
    TTGATTCTTG TCTGGTCGAT ATATGCATAT CATGTCATGA AGGTCCCGCA 
    GCAGTAGGGT GGCACTTGAC AGGTAGCCTT GACATTAACA TATAGCTTTA 
    GGTCGCAAAT TAGTGACTAA GCAATGTAGC AATGTATATT ATTAACCCGT 
    GTAAAGTAAA TGTCATCGAC ATGGTTTTGT TTCTGTCTTT TTCTTTTTTC 
    TTTTCTTGGG TCCGGGCTTC TACTGCCGTA TAATTTTGAT AAGAGGGAAG 
    TATATGGGTG GTCAACTTGT GCGGATGTGT CATTCGAATC TGAACTCTCA 
    AAATATATTT TGGGTATCAA ACTTGTTTTG GGTGTCATGT AGGCCCAAAC 
    GAGCTCTGAC CTGTTTTATG CACGGATGTG GC

    Gene models with high sequence identity

    1. AT5G57350.2 [+] show detail - H(+)-ATPase 3
      E-value: 3e-98; Score: 357.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.5e-17
    Gene3D no description 3.1e-13
    superfamily Calcium ATPase, transmembrane domain M 8.9e-27
    superfamily HAD-like 1.8e-19
    superfamily Calcium ATPase, transduction domain A 1.1e-11
    HMMPfam ATPase, P-type, ATPase-associated domain 1.4e-20
    HMMPfam ATPase, P-type cation-transporter, N-terminal 9.6e-10
    HMMPanther ATPase, P-type, plasma-membrane proton-efflux 2.1e-84
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.1e-84
    FPrintScan ATPase, P-type, H+ transporting proton pump 3.9e-11
    FPrintScan ATPase, P-type, H+ transporting proton pump 3.9e-11
    FPrintScan ATPase, P-type, H+ transporting proton pump 3.9e-11
    FPrintScan ATPase, P-type, H+ transporting proton pump 3.9e-11
    FPrintScan ATPase, P-type, H+ transporting proton pump 3.9e-11
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 1.2e-06
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 1.2e-06
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 1.2e-06
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 1.2e-06

    See the detailed result >

    AT5G57350.2

    Model type
    Protein coding
    Short Description
    H(+)-ATPase 3
    Curator Summary
    member of Plasma membrane H+-ATPase family
    Computational Description
    H(+)-ATPase 3 (HA3); FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 2 (TAIR:AT4G30190.1).
    Link
    InterPro Scan - TAIR