K22345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22345

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22345

Determination of introduced cDNA(s)

  • J033087F22 - Rice Full-length cDNAs - Original: J033087F22

    full reading [+] show sequence

    Nucleotide sequence: J033087F22 - full reading 
    GAGCATTGCT TCTGATCAGA AGAAGATCCC GGAAGAGACC AAATCAGAAG 
    CTAAACCTAT CTACCACAAG GCCAAGTTAC GTTAGACCGT TTTGATCAGT 
    GAATTAGCTT TCAAGCAGTT CTACTGCTCC CAGCCGCTCG ATCGATCGAT 
    CGATCAAACA AGGTAGCTAG CTGGCTCAGG ATCAAATCTG GTTTGTCTAC 
    ATATATAGGT AGTGATCGAT CAGTCGGTCG GTCATGGAGG CTCTTAGCGG 
    GCGAGTGGGG GTGAAGTGTG GGCGGTGGAA CCCGACGGCG GAGCAGGTGA 
    AGGTCCTGAC GGAGCTGTTC CGAGCGGGGT TGCGGACGCC GAGCACGGAG 
    CAGATCCAGC GCATCTCCAC TCACCTCAGC GCATTCGGCA AGGTGGAGAG 
    CAAGAACGTC TTCTACTGGT TCCAGAACCA CAAGGCCCGC GAGCGCCACC 
    ACCACAAGAA GCGCCGCCGC GGCGCCTCCT CCCCCGACAG CGGCAGCAAC 
    GATGACGATG GCCGCGCCGC AGCCCACGAG GGCGACGCCG ACCTCGTCCT 
    GCAGCCTCCT GAGAGCAAGC GGGAGGCCAG AAGCTACGGC CATCATCACC 
    GGCTCATGAC ATGCTACGTG AGGGATGTGG TGGAGACGGA AGCGATGTGG 
    GAGCGGCCGA CGAGGGAGGT GGAAACGCTG GAGCTGTTCC CACTCAAGTC 
    GTATGACCTC GAGGTGGACA AGGTCCGGTA TGTGAGGGGC GGCGGTGGCG 
    AGCAGTGCAG GGAGATCTCG TTCTTCGACG TCGCTGCCGG CCGGGATCCG 
    CCGCTGGAGC TCAGGCTTTG CAGCTTCGGC CTCTAGATCG ACCCGTGCAT 
    TGATGTGCCG CACATATGGC ATGAGATGCA GCTTGCCGCG ACTGTACCTG 
    GCCTCTTGTC GCTGTGCCTA GTCCTAGTTC TAGCTGCCCC ACATCAAAAG 
    GAGTACGTAC GAGATGTCAT GAGATACGGC ATGTGTTGTG GGAAAGTCCG 
    TTGTTGCATG CAGTATCTGG GAGGATCAGG AAAGAGCACG CAAACGAGAT 
    TTCCCCATTG CCCTTTTCCT TGGTCTTTCC ATCATGAGAT GTACTTCTAC 
    TTTTCTTCTT TTCTGCTACA TGGATACTAA CATGGTCACT GCTGATACTT 
    CTATATGATA TATCCATTAA TTAATATTCC

    Gene models with high sequence identity

    1. AT3G11260.1 [+] show detail - WUSCHEL related homeobox 5
      E-value: 2e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homeobox 10.106
    HMMPfam Homeobox 5.9e-18
    superfamily Homeodomain-like 1.1e-11
    HMMSmart Homeobox 0.00076

    See the detailed result >

    AT3G11260.1

    Model type
    Protein coding
    Short Description
    WUSCHEL related homeobox 5
    Curator Summary
    Arabidopsis thaliana WOX5 protein mRNA
    Computational Description
    WUSCHEL related homeobox 5 (WOX5); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 7 (TAIR:AT5G05770.1); Has 538 Blast hits to 538 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 538; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR