K22023

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22023

Determination of introduced cDNA(s)

J033147C23 - Rice Full-length cDNAs - Original: J033147C23

full reading [+] show sequence

GATCGGCACC CCCATCGCCA TCGGCACCAT CACCAACTAC GCCATCAGCT 
ACGTGACCAC CATGTTCATC GGCCACCTCG GAAACCTCCC CCTCGCCGCC 
GCCTCCGTGG GCCTCTCCGT GTTCGCCACC TTCGCCCTCG GCTTCCTCCT 
GGGCATGGGC AGCGCCCTGG AGACGCTGTG CGGGCAGGCG TTCGGAGCCG 
GGCAGGTGTC CATGCTGGGC GTCTACCTCC AGCGATCCTG GATCATCCTT 
CTCGGCGCCA CGGTCCTGAT GGTCCCCGTG TACGTGCTGG CCGAGCCGCT 
GCTCCTGCTG GTGGGGCAGG ACCCGGAGGT GGCGCGCGCG GCGGGGCGGT 
TCACGCTCTA CATCCTCCCG GGCGCCTTCG CCTTCGCCGT GAACTTCCCG 
TCGGGCAAGT TCCTCCAGGC GCAGAGCAAG GTGGGGGTGC TGGCATGGAT 
CGGCGTGGCG GGGCTGGCGT TCCACGTGGG CATCACCTAC CTCGCGGTGT 
CGGTGCTGGG GTGGGGGCTC CCGGGCGCGG CGGCGGCGTA CGACGTGTCG 
CAGTGGGCGT CGTCGCTGGC GCAGGTGGCC TACATAATGG GGTGGTGCAG 
GGAGGGGTGG CGCGGGTGGT CCATGGCGGC GTTCCACGAC CTGGCCGCCT 
TCCTCCGCCT GTCCATCGAG TCGGCGGTGA TGCTGTGCCT CGAGATATGG 
TACCTGGGCC TCATCACCGT CCTCACGGGG GACCTGGACG ACGCCCAGAT 
GGCGGTCGAC TCGCTGGGGA TCTGCATGAA CATCAACGGC TACGAGGGCA 
TGATCTTCAT CGGCCTCAAC GCGGCCATCA GCGTCCGGGT GTCCAACGAG 
CTGGGCTCCG GGAGGCCCAG GGCGGCCATG CACGCCGTGG TGGTGGTGGT 
GGCGGAGTCG CTGCTCATCG GCCTCCTCTG CATGGCGCTC GTGCTCGCCT 
TCAGCGACAA GCTGGCGCTC GTCTACACCA GCGACGCCCA CCTGCTCCGC 
GCCGTCTCCA GGATCGCTGG CCTGCTCGGG GTCACCATGG TGCTCAACAG 
CGTGCAGCCG GTGCTGTCCG GTGTGGCCGT CGGCGGCGGA TGGCAGGGCC 
TCGTCGCCTA CATCAACCTC GCCTGCTACT ACCTCTTTGG CCTCCCCGTC 
GGCTACCTTC TCGGTTACTA CTTCAACCTC GGAGTCGGGG GGGTTTGGGG 
TGGCATGCTC TGTGGAGTTG CACTTCAAAC ACTCATTCTA CTCTTTGTAG 
TCTGGAGAAC AGACTGGAAG GCAGAGGCTG CGCAAGCTTC AGCTCGTGTG 
CACAAGTGGG GAGGCACAGA TGAAACCAAA CCTCTCTTAC AAGGAGATCA 
TTCAGACAGA GATTAGCATA TGCATACCCT GTTTCTCTTT TTCTTTTCCC 
CCTGCGCAGA GCAGATACGA AGTTGGACTC CAAATTCAAT TCTTATCCTG 
CATGTACCAG GCAGCTCTGT ATTCTTCAAT TGTACGATTT TTGTATACGC 
TACTGGGTCA CAATTTATTA ACATTGTACG CTATTGGGGA TTTGGGGTTC 
TTCCCTCCCT CTTCTATTTA TTATTACAAA CAAGAATACA ACAGACC

Gene models with high sequence identity

AT4G00350.1 [+] show detail - MATE efflux family protein
E-value: 4e-147; Score: 518.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Multi antimicrobial extrusion protein MatE	3.6e-30
HMMPfam	Multi antimicrobial extrusion protein MatE	1.5e-37
HMMPanther	MULTIDRUG RESISTANCE PUMP	7.5e-228
HMMPanther	Multi antimicrobial extrusion protein MatE	7.5e-228
HMMTigr	Multi antimicrobial extrusion protein MatE	6.7e-76

See the detailed result >

AT4G00350.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link: InterPro Scan - TAIR