K21934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21934

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21934

Determination of introduced cDNA(s)

  • J013039B08 - Rice Full-length cDNAs - Original: J013039B08

    full reading [+] show sequence

    Nucleotide sequence: J013039B08 - full reading 
    GGCCGAAGCT GCGCTGGGTG ACGAGAGCGA GCAGCTGGCG GGCGGCGACG 
    AATGGCTCGA CTGCGCTGGC GTGCACGGGA GGCGGCAGAG AGCAGCGGGC 
    CAGCTGCAAG CCGACAGTGA CGCCGGCAAG CAAGCAGTGC ACAGCCATGG 
    TTGCGCCGTC TCGGCTCCCA TCCCATGAGG AGCAATCCGC CGCCGCCGCA 
    GCCGACGGCT CGGCCACACC GTCCCAAGGA ATCCCCGTCG TCGATCTCGG 
    CGTCCTCATC AACGGCGCGG CCGACGAGCG GTCGCGGGCG ATCCGCGACC 
    TAGGCAGGGC ATGCGAGGAT TGGGGCTTCT TCATGGTGAC TAACCATGGG 
    GTGCCCGAGG CTCTCCGAGA AGCAATCATG GACGCCTGCA AGGAGCTGTT 
    CAGATTACCT TTGGAGGAGA AGAAAGAGTA CATGCGTGCC AAGCCGATGG 
    ATCCTATACG GATCGGTACA GGTTTCTACT CTGTCGTCGA CGCCGTACCA 
    TGCAGGAGGG ACTACCTGAA GATGTTCTCT CATCCTGAAT TCCACTGCCC 
    CGAAAAGCCC GCAAAGCTGA GGGAGATTGC AACGGAGTAC GCGACCTGCA 
    CGAGAGCCCT GTTGCTGGAG CTCACCAAGG CGATCTCCGA GAGCCTGGGC 
    CTCGCCGGCG GCCGCCTCTC TGAAGCGCTC AACCTCGAGT CCTGCTTCCA 
    GATCTTGGTG GGGAACCATT ACCCTGCGTG CTCTAGACCG GACGAGCAGG 
    CGATGGGATT ATCGGCTCAC TCCGACCATG GCCTCCTCAC CCTGCTCTTC 
    CAGAACGGCG TCGATGGCCT CCAGGTCAAG CACGATGGCG AATGGCTCCT 
    CGCGAAGCCC CTCCCGGGCT CCTTCTTCGT CATCGCCGGC GATCAGTTGG 
    AGATTGTGAC CAACGGAAGG TACAAGGGCG TGCTCCACCG CGCGGTGGTC 
    GGCGGCGAGC AGTCGAGGAT GTCGTTCGTG AGCCTGATCG GGCCGTGCAT 
    GGACACCGTC GTCGAGCCGC TGCCGGAGAT GGCGGCGGAC GGCCGGGGCC 
    TGGAGTTCCG GGGGATCAGG TACAGGGACT ACATGGAGAT GCAGCAGAGC 
    AACAGCATCA ACGAGAAGAC GGCGCTTGAC ATCGTTCGCG TGATGCATCA 
    GGCCGGGTGA CATGTTGACA TGCCAAGGAG GCAGTGCCAT GTTAGGAATT 
    GGGCCGGCTG CACTACGACC CAACACAGTG AGTAGCCCAA TCCTTGGCCC 
    AAGCAAGATT CTAGTGAAGA AGGTTGCTAA CATGCCAGTA CGTGAACAGT 
    TCAGCAGAAG CTGATCCTGC AGGGCCTGTG TAGTTTGCAG GCGCCGATTC 
    GTTGTAAAGC TCGAACTGTG ATATGTGGAA TGTTCATCAT CATCATATGG 
    AAAATAAATG CCAAGTCCGA GTTTAATTCC

    Gene models with high sequence identity

    1. AT2G36690.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 5e-53; Score: 205.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 3.1e-20
    Gene3D no description 8.7e-86
    superfamily Clavaminate synthase-like 6.9e-84
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 3e-90
    Coil coiled-coil 0

    See the detailed result >

    AT2G36690.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G60290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR