K20723

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20723

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20723

Determination of introduced cDNA(s)

  • J033126H16 - Rice Full-length cDNAs - Original: J033126H16

    full reading [+] show sequence

    Nucleotide sequence: J033126H16 - full reading 
    GGCGGTGCTT CGATCCCCCT CTCCGCCTCG CGAATCTCCT CCCCTCCCCC 
    ACGCAACTCG CCGCCTGCGC TGCCGCTGCT CGTGAGGGGG AGACGACGCC 
    GGAGGAGATC GCCGCCGCCG CCGCCGCCGC CTCGGACGGC CGCGCCCCCC 
    CGCCGCGCGT GTACCACGGG CTTGGGGGAT TGATTGGTAG CGATGGCGGC 
    GCCGCCGGCT AGGGCTCGGG CCGACTACGA TTATCTCATC AAGCTGCTCC 
    TCATTGGCGA CAGCGGTGTA GGAAAAAGTT GTCTCCTCCT ACGGTTCTCA 
    GATGGCTCTT TCACGACTAG TTTCATTACC ACAATTGGTA TTGACTTCAA 
    GATAAGGACC GTTGAGTTGG ATGGTAAACG GATTAAATTG CAAATCTGGG 
    ATACTGCTGG CCAAGAACGC TTTCGAACTA TTACCACTGC TTACTACAGG 
    GGAGCAATGG GCATTTTACT CGTTTATGAT GTCACCGATG AATCTTCATT 
    CAACAACATA AGAAATTGGA TCAGAAACAT CGAACAACAT GCCTCTGATA 
    ATGTGAACAA AATTTTGGTG GGGAACAAAG CTGATATGGA TGAAAGCAAA 
    AGGGCTGTAC CCACTTCAAA GGGACAGGCT CTTGCTGATG AATACGGAAT 
    CAAGTTCTTT GAAACGAGTG CAAAGACAAA CCTGAATGTT GAGCAGGTTT 
    TCTTTTCTAT AGCAAGAGAT ATCAAACAAA GACTCTCAGA GACTGATTCC 
    AAGCCTGAGG ACCGAACCAT CAAGATCAAA TCGGAAGGGG AAGCCGAGGC 
    AGCGGCGGCT CAGAAATCAG CTTGCTGTGG ATCTTAGAAG GGTTCTCACT 
    ACATGGATAA AATGGTGGTG AAATGGTGCT TGTAATTTTT ATCATTTCAT 
    TCTTTGTCAG CTACTCTCTT TGTGCGTTAT TTAACTTATT GCAATTGTCT 
    TGATTTGGAC AAATGGGTGT TAAGTGAGAA CAATTACTTT GAATATTGGT 
    GG

    Gene models with high sequence identity

    1. AT3G46060.3 [+] show detail - RAB GTPase homolog 8A
      E-value: 2e-81; Score: 299.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ras GTPase 1.3e-46
    FPrintScan Ras GTPase 1.3e-46
    FPrintScan Ras GTPase 1.3e-46
    FPrintScan Ras GTPase 1.3e-46
    FPrintScan Ras GTPase 1.3e-46
    HMMTigr Small GTP-binding protein 8.7e-31
    HMMPfam Ras 1.9e-66
    ProfileScan Small GTPase 38.298
    HMMSmart ADP-ribosylation factor 0.0029
    HMMSmart Ras small GTPase, Rab type 1.8e-106
    HMMSmart Ras small GTPase, Ras type 4.9e-35
    HMMSmart Small GTPase, Rho type 3.9e-14
    HMMSmart Ran GTPase 1.3e-09
    Gene3D no description 2.7e-66
    superfamily P-loop containing nucleoside triphosphate hyd 4e-67
    HMMPanther RAS-LIKE GTP-BINDING PROTEIN 7.1e-103
    HMMPanther RAS-RELATED GTPASE 7.1e-103

    See the detailed result >

    AT3G46060.3

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog 8A
    Curator Summary
    small GTP-binding protein (ara-3)
    Computational Description
    ARA3; FUNCTIONS IN: GTP binding; INVOLVED IN: ethylene mediated signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT5G59840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR