K20050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20050

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20050

Determination of introduced cDNA(s)

J013170B16 - Rice Full-length cDNAs - Original: J013170B16

full reading [+] show sequence

TTGGGATTGG TTTCTTTCTG CTCTGTTGCA GCTCCGTTGT CTATGGTAGG 
TACCTTTTGG ACGGAGGTTT TGCATTTGCC TAGTTACTAG TAACTGCATA 
ATTAACAGGA GGAGTACTAC CAAGAATGCA TACTAATTAT TCGCGTGATA 
TTTTGTACGT TTAAGTTTAG AGAACCCGGG ATTCGACCAG ACCATCAGTC 
CACTCTCTCT CTCTCTCTGC TTCTTCTTGT GTTGTGCTTG TGCCTCCTCA 
TTATTAATAT CTGTACTCCA TATTCTACTA CTGCATGCTG GAGTACTCTG 
GTCATGGAGC ATTTGACATT TGCATCCACC CCGATGAGCT GAGCTGCTCC 
ATTAATATAC TATTCCTCCT CAATTAGTCA TTCACTACAT ACATACAGCA 
AAATCCTAGC ACCACGACGG CGGCCGCATT TGTATGAAAT CGATAGATCG 
TCTCTCTCTC TCTCTCATCC AACCAACCAC GCACAGCGAC TCAGCGAGCG 
AGGAACAACT AGAGCTTGAT GCCAGTGTCG CGGATGATGA TGGAGTCGAA 
TACGATGGCC AAGGAGATGG CCGTGCGGCA CCACCTCCTT CCGGGGTCTC 
CTCGCCGCCG CACCGCACAC AACCTCTCAT CTTCCTCCCT CCGCAAAAGC 
TCCGACGCCT CCCTCCTCCA CAAGGTTCCC TGCGCCGCCC TCCGCTCCCT 
CCTCGCCAAT CTCAACGACG TCCTCCTCAC CACCAGGCTC TTCCTCCTCT 
TCCCCGCCGT CCTCCTCGCC ATCGCCGCCA CTTACCTCCA CTTCGGACAG 
GTGTGGGTGT TTGTGCTTAG CTTAATCGGC CTCGTTCCTC TTGCTGAGCG 
ACTCAGCTTC CTCACCGAGC AGATTGCATT TTACACCGGT CCTACTGTGG 
GAGGACTACT GAACGCGACA TTTGGGAACG TGACGGAGGT GATAATCGCG 
CTGTTGGCGC TGCGAGAAGG AAAGATTGAG GTGGTGAAAT GCTCCCTGCT 
GGGATCCATC CTCTCCAACC TGCTGCTTGT CCTCGGCACC TCCCTCTTCC 
TCGCCGGCAT CGCCAACCTC CGCGCCCACC AGCCGTACGA CACCAAGCAA 
GCTCACGTCA ACACCGCCCT CCTCATGCTC GCCGTCCTCT GCCACTCCCT 
GCCGCTCATG CTCAGGTACG CCGTCACCTC CGGCGACCAC GCCATCGTCT 
CCGGCGACGC CGCCCTCCAC CTGTCGCGTG CCTGCAGCAT CCTCATGCTC 
ATCGCCTACC TGGCCTACCT CTTCTTCCAA CTCAACACGC ATCGCCAGCT 
GTTTGAGCCC CAACAGGTTG AGGATGATGA CGACGATGAT TTAGTGATCG 
CTCAAGATGA TGAGCCAGTA CTGGGATTCT CGAGTGCCAT GATTTGGCTG 
GCTCTCATGA CTCTCCTGAC TGCGCTCTTG TCAGGGTATG TTGTGAGCAC 
AATTGAGGCG GCCTCAGAAT CATGGGAACT ATCAGTGAGC TTCATTAGCA 
TCATCTTGCT TCCCATCGTT GGGAACGCAG CAGAGCATGC CGGTGCCGTC 
ATATTTGCTC TCAAGAACAA GATGGATATT ACTCTCGGAG TGTCTTTGGG 
CTCTGCCACA CAGATCTCCA TGTTTGTGGT TCCAGTGAGT GTGATTGTAG 
CCTGGACTAT GGGAATCCCA ATGGATCTTG ATTTCAACCT GCTGGAGACT 
GGCTCTCTGT TTCTAGCAAT ATTAGTGACA GCCTTCACCC TCCAGGAGGG 
AGAATCACAT TATCTGAAGG GATTGATTCT TGTCCTGTGC TACGCTGTCA 
TCAGCGTGTG CTTTTTCGTT ATAAGACGGC GTTCTGCAGG AGGGACGGAC 
GGTGTTCACC ATCTGGATGT GATTGTGTAG CAAATTACTA ACAGGCAGAC 
CGCAGAAGCA GAAACGTACG TACATGCGCC TAACATATAT ATGGAGTCCG 
TACAGTACGT GCTAGCTACG GAGTACTCCT GTACACTACT GTACTACTGC 
TTGCACAAGA GAAGAGGATC GAGTACCGTA GCTAGCACAG GCGGCGGAGA 
CGAGACGATC TGCTTGCTTG AGGAGGCAGC CGATCGAAGC CGGACTGGGC 
GGAGATCGAT GCATGGATCC AGTTTGTTTA GACTGACGGA CGATAGAGGA 
TGATACCACG ACCCAACCAT CCGTCCCTGC AATTGGCTGG TTTGGTCATT 
CAAATAGGGA ATCACAATTG GGTTTTAATG GGTTGCTTTA GTTTAGGTCG 
TTTTGGAATG GTTTGTTTAT ATTTATCTTT TTCAAAGGAG TTTGTTTAGG 
TTTATCGAAC TACTAGAATA TACATCCATC TTAAGATTAT TACATTTTAA 
AATAAAGATA TATAGTATG

Gene models with high sequence identity

AT3G51860.1 [+] show detail - cation exchanger 3
E-value: 2e-118; Score: 423.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Calcium/proton exchanger	4e-168
HMMTigr	Calcium/proton exchanger superfamily	9.2e-94
HMMPfam	Sodium/calcium exchanger membrane region	2e-21
HMMPfam	Sodium/calcium exchanger membrane region	5.8e-18

See the detailed result >

AT3G51860.1

Model type: Protein coding
Short Description: cation exchanger 3
Computational Description: cation exchanger 3 (CAX3); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 1 (TAIR:AT2G38170.1); Has 3567 Blast hits to 3405 proteins in 1022 species: Archae - 24; Bacteria - 2167; Metazoa - 14; Fungi - 725; Plants - 252; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).
Link: InterPro Scan - TAIR