K20005

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20005

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20005

Determination of introduced cDNA(s)

  • J023003N17 - Rice Full-length cDNAs - Original: J023003N17

    full reading [+] show sequence

    Nucleotide sequence: J023003N17 - full reading 
    GGGTAATGTA CCCGCAGCTT CTAGAACCCT CCATTCTCCC CACGTATAAG 
    GCCGCGCCCC GCGATCCAAG CAGCAGCAGC CATAGCCCCC GCCAGCTCGC 
    CGCCGCCGCC ATGTTCGGCG TCGTCTTCCC GGACCACAGC TTCCCGCTCG 
    ACGTCACCGC CTTCGCGCAG GTGGCGCCCA ACTCCTGGGC GCTCGACCTC 
    TCCACGCTCT CCCTCGCCGC CGCCCCGCGC TCCGCCGTCG TCTTCCTGCT 
    CCCGGCGCTC CCTCCGCCCC CCGACGGGCA GCGCGCCGAG CGTGTCGCGC 
    TCCGCGTCGG CGAGAACCTG TTCAACTTCA TGCAGTCGTT CTGCGGCGCC 
    GACGGCGGCA AGCTGGTGGT GCCCACGGAC ATCCTCGACC GGTGGTTCCG 
    CAAGTTCCAG GAGCGGCCAA GAAGGATCCC TCGTATCTCA AGACATTCGA 
    CTTTTGAGAG CGAAGGTTAT TTTGCAGTTC ATTGCAAACT GCATGTCGGC 
    AGAAAGGGTT GGTTAGTAGA GTTTTGTATT TGTAGACCAT CTATCAGTTC 
    TGTATTTCTA GACAGAAATT AACTTGTCAT TCAGGGACTG GATTCAATCA 
    TGGTTGCCAG TTTTTTTTTT CTTTTTTTTT CTGTACTTCT AGTACTCCTA 
    GAGAAGTGGT ACCAAAAGCC AGAACCACAA GAAGGTACTT GCGTCAAAAG 
    ATGAAATCGT GTTGCCAAAC TGTACAGTAA TACAATTGAA CTTTGCT

    Gene models with high sequence identity

    1. AT1G66080.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR0084...
      E-value: 4e-16; Score: 21.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF775 1.9e-05
    HMMPfam Protein of unknown function DUF775 1.1e-12
    Coil coiled-coil 0

    See the detailed result >

    AT1G66080.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR008493); Has 285 Blast hits to 283 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 88; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR