K19943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19943

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19943

Determination of introduced cDNA(s)

  • J013055K10 - Rice Full-length cDNAs - Original: J013055K10

    full reading [+] show sequence

    Nucleotide sequence: J013055K10 - full reading 
    GGCTCGCTCC CGATCACACC GTCCGCCACC GGAAGAGAGA GCCCCCCTAC 
    GACGACGACG ACCATGGCGC TCGCCTCCAC CTCCGCCACC GCGTCCGCGG 
    CCGTGCTCAA GACGCCCTTC CTCGGGGGGA AGCGCGCGCT CGCCAATGCC 
    GTCGGCGTCG CGGGCGCCAA GCCCGCGCCG CGCCGCGCGC TCGTCGTGTC 
    GGCCAAGAAG TCGTGGATCC CGGCCTTCAA GAGCGACGCC GAGTTCATCA 
    ACCCGCCGTG GCTCGATGGC TCGCTCCCCG GTGACTTCGG CTTCGACCCG 
    CTGGGGCTGG GCAAGGACCC GGCGTTCCTC AAGTGGTACA GGGAGGCGGA 
    GCTGATCCAC GGGCGGTGGG CGATGGCGGC GGTGCTGGGG ATCTTCGTCG 
    GGCAGGCGTG GAGCGGCGTG CCGTGGTTCG AGGCCGGCGC GCAGCCGGAG 
    GCCATCGCGC CCTTCTCCTT CGGCTCCCTC CTCGGGACGC AGCTGCTGCT 
    CATGGGCTGG GTAGAGTCCA AGCGGTGGGT CGACTTCTTC AACCCGGACT 
    CGCAGGCGGT GGAGTGGGCC ACGCCGTGGT CGCGCACCGC CGAGAACTTC 
    TCCAACGCCA CCGGCGAGCA GGGCTACCCC GGCGGCAAGT TCTTCGACCC 
    GCTCGGCCTC GGCGGCGAGA CCAGGGACGG CGTCTACATC CCGGACACCG 
    ACAAGCTCGA CCGGCTCAAG CTCGCCGAGA TCAAGCACGC CCGCCTCGCC 
    ATGCTCGCCA TGCTCATCTT CTACTTCGAG GCCGGCCAGG GCAAGACGCC 
    GCTCGGCGCC CTCGGCCTAT GAGCAATCAA CCCCGCTCTC GCTCGCCATG 
    GATCTGACAC ACAGAGTTGG GTTTCGCTTG CATGCGCGCT TCGTGTTTGA 
    TCGCTAGCTG TTGCATCGAT CGGGCGCGTG CATGGGCTCG GATCGAACGA 
    TTGGAGGTCG GAGGAGCAGT AGCAAAATGT ATCTTGTTGT GTTCGTGGCC 
    GCTTTTGGGT TGGGTGGTGT GCGTGAACCA AATGGGGGAA TTAATCAAGG 
    AGTTATTTTT TTTTATTTTT CTTCCCAGTG TATGTACCAT ATGTAATATA 
    TATAATTAAG GCTGCAGGAT GAGCAAGGAT ATTTCATTGA TCCC

    Gene models with high sequence identity

    1. AT1G15820.1 [+] show detail - light harvesting complex photosystem II subunit 6
      E-value: 3e-112; Score: 402.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chloroa_b-bind 1.2e-45
    HMMPanther Chlorophyll A-B binding protein 2.8e-87
    superfamily Chlorophyll a-b binding protein 6.5e-43

    See the detailed result >

    AT1G15820.1

    Model type
    Protein coding
    Short Description
    light harvesting complex photosystem II subunit 6
    Curator Summary
    Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.
    Computational Description
    light harvesting complex photosystem II subunit 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 2316 Blast hits to 2191 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1959; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR