K19134

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19134

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19134

Determination of introduced cDNA(s)

  • J013002E11 - Rice Full-length cDNAs - Original: J013002E11

    full reading [+] show sequence

    Nucleotide sequence: J013002E11 - full reading 
    GGCACGTGCT CGCGGCGATC GATCACAGAT TTCATTCTTG TATACAGTAC 
    GCGTTCATGG AGGCCTTGGC GTCGTTCATG GATTTGGAGG GGCGGCCCCA 
    TCAGCATCGG TGGTCGATGA GGAGGGGCGG CGGCCTCTTC TTCCCGCAGA 
    TCAGCAGCGC TGCCGGAGAA TTAGGCTGGT CCAGCGATAG CTCCACGGCT 
    TCGAGCCCGG CGCCCTCGAC GTTGTCGTCT TCTTGCATGT CATCCCCTTG 
    GGGCGGCGGC AGCGGCCGCT GGTCAGCTTC TCCGGCTCCG GCGGCGTCAT 
    CCGGGCTCCA CCAGATGGTC CGCGACAACT ACACGCAAGG ACTCATCCGG 
    GCGTTCGGCC GCCGCCGCCA TGACGAAGCT CTCCTCCACA AGTGGTTCTC 
    GCAGCTGGAC GTCGAGTGGG TTCTGCTCCT CCACGCCGGA CAAAGAGATC 
    TAGACTCCTC CTCCGTCGAA GATTTGATGG CGTTGATGGA GCGGTGGATG 
    AGAGCTCTCC TAATCATGGT GCAGGTCCTC TCCATGACGC TGCTCGAGCT 
    CCGAGACAGA AGGTCGTCGT CATCACTCGC CGGCACCGAC GACGACGATG 
    CCTTCCTGCT TCGCACAAAG GGATCGGCAG GCAACAGGTC ACCGGCACCG 
    GAGCTGCCGG GCTTCGTGTG CGTGCAGGAG GTTGTGCAGT TCGCGGAGGC 
    GAGCATCCTC AGGATGCTGG CCTTCGTCGA CGCCATCACA CTAGCCGCTC 
    TCAACGACGA CCACCGCCGC CGCCACCGGG AGCCGGAGAT GCTCCCGGGG 
    ATGCTGTACC TCTACGACTG CTTCTCCGAC GCCTCGCCAA CCGTCCTCGC 
    CTTCTTCAAA GAGGCATCCG ATGTCCTCCG GCTCCGGCTC AGGGAAGAAT 
    GAGGCGCGGC CGGGGCCGGC ATTTGACGAC GCCATCAATG GCATCTTCTC 
    GCGGAAGAGG TCCAAGCTGA GTGATGCTAT CTGGGGAATG ATGGAGAAGG 
    TTCGGGCATC CTTCCTGATG GACACCTTCT GGCAAGTCTC ACCGGACGCA 
    GCTGATGATG AACTACATCG CACTTGTTTG GTGCAACGGA GACGTGCTCA 
    AATTCATCCT ACAGGATCAC CACTTCCGCT TGTTCATCTC CGACACCGAG 
    GGCTTCAACG CGGTGGTGAA CCTAATCACC GATATGATCT CCTGCCTCAG 
    GAGCAAGCTC GAGGAAGCAT CCCTTCTCAT CTCGGACCCG GGATTGCGGT 
    GCATATTCTT GCTCAACAAT TGGCAGCTTG TCTTGCGCCG CGTTGAATCC 
    ATGGACCTGC CATCTTCGGC CCTGATAGAA ACAAGCATGA CACAGAGGTA 
    CATAGATACT TACCTCCATG TCTCCTGGTC CCCTCTGCTG AGTTGCCTGT 
    TCATTGAAAA CCCTTCTATT AGTCTTGGAA AGACAAGAGC CGGCAAACCT 
    TTCGGCTTTC GAAGATACTT GTCACTTGAT AGGTTTGAGT CAGAATTCCA 
    AAGAACCTAC ACAAATCACA AGTTTTGGAA GGTTCCAAAC CCTGACCTTC 
    GGCAGAGACT GCATCAAGCC ATCGTCCAGA AAGTCGTCAC ACACTATAGC 
    ATGTATCTAG AGGAGCGAGC AGCAAGGGGA ATGCACAATC AACCGCCCAA 
    GTCCACGCCC GAGCAGTTGA AGGAGTTGTT GGATGAATTA TTTGAAGGAT 
    GATGATGAGT TCAATGCAAT TGCTATGGAA AATTCACCTC AATAACTTAG 
    GCATTTCAGT TGACTCTTTC TCACCATTGG TTACGCGCTT AAAGGTTTGT 
    GCTCTAGTCA ACACTCACTC TATGGTCGTC TTTTGGTGAT GATGGTGACA 
    GGCTAATTTC CTGCCAAAAA AAAAAGTTTG AATTTCACTT CAGACTTCTG 
    GAAACTACTC CAAAAAAAAA ATTCACCCAG ATGCTATACT TTGTAGTTTT 
    AATCTTTGCA TTACAATTTC ATTACCCTCT GTACAGAGTA TATATTATAA 
    TCGCTTTGCT TGTACTTTGG TTTTCTAGTG TGTGCCCGCA AAGTAAGAAC 
    TACTTCCTCC GTCAGTAACA AGTTGTAAAA TCCTAAAAAA TAACTTAATT 
    GAGATGTTAG CTTATC

    Gene models with high sequence identity

    1. AT5G50380.1 [+] show detail - exocyst subunit exo70 family protein F1
      E-value: 8e-17; Score: 86.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Exo70 exocyst complex subunit 8.6e-56
    HMMPfam Exo70 exocyst complex subunit 2.9e-11
    HMMPanther EXOCYST COMPLEX PROTEIN EXO70 5.1e-19
    HMMPanther Exo70 exocyst complex subunit 5.1e-19

    See the detailed result >

    AT5G50380.1

    Model type
    Protein coding
    Short Description
    exocyst subunit exo70 family protein F1
    Curator Summary
    A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
    Computational Description
    exocyst subunit exo70 family protein F1 (EXO70F1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein D3 (TAIR:AT3G14090.1); Has 952 Blast hits to 944 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 117; Plants - 671; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR