K18523

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18523

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K18523

Determination of introduced cDNA(s)

  • J023126C19 - Rice Full-length cDNAs - Original: J023126C19

    full reading [+] show sequence

    Nucleotide sequence: J023126C19 - full reading 
    GTCCCGGCCT CTCCACCCAC CCCTCGATCT CTCGCTCGCT CGCCGCCGAT 
    CGGATCGCGT GGTTGGATCA TCACAACTCT GCAAAGATGA GAGAGATCCT 
    GCACATCCAA GGCGGGCAAT GTGGCAACCA GATCGGTGCC AAATTCTGGG 
    AGGTGGTGTG TGATGAGCAT GGCATTGACC CTACCGGGCG GTACACAGGC 
    AACTCAGATC TGCAGTTGGA GCGTGTCAAT GTGTACTACA ATGAGGCCTC 
    CTGCGGTCGC TTTGTGCCTC GTGCTGTTCT CATGGACCTT GAGCCTGGTA 
    CTATGGACAG TGTCCGCACT GGGCCCTATG GCCAGATCTT CCGCCCTGAC 
    AACTTTGTGT TCGGGCAATC TGGTGCTGGT AACAACTGGG CCAAGGGACA 
    CTACACTGAG GGTGCCGAGC TAATTGATTC TGTTTTAGAT GTTGTGAGGA 
    AGGAGGCTGA GAACTGTGAC TGCCTGCAAG GATTCCAAGT ATGCCACTCT 
    CTTGGTGGTG GTACTGGATC TGGTATGGGT ACACTTTTGA TATCAAAGAT 
    CAGGGAGGAG TACCCTGACC GCATGATGCT GACATTCTCA GTTTTCCCCT 
    CACCAAAAGT ATCTGATACT GTGGTTGAGC CATACAATGC TACACTCTCA 
    GTCCATCAGT TGGTTGAGAA TGCTGATGAG TGTATGGTTC TTGATAATGA 
    GGCTCTCTAC GACATTTGCT TCAGGACTCT CAAGCTGACC ACACCTAGCT 
    TTGGGGATTT GAACCATTTG ATTTCTGCCA CCATGAGTGG AGTCACATGC 
    TGCCTAAGGT TCCCTGGTCA GTTGAACTCT GACCTCCGTA AGCTGGCAGT 
    GAACCTTATC CCCTTTCCCC GTCTCCACTT CTTCATGGTC GGATTCGCCC 
    CGCTGACATC ACGTGGCTCC CAGCAGTACC GTGCCCTTAC TGTTCCTGAG 
    CTCACACAGC AGATGTGGGA TGCCAAGAAC ATGATGTGCG CTGCTGATCC 
    TCGCCATGGC CGTTACCTCA CCGCCTCTGC CATGTTCCGT GGAAAGATGA 
    GCACCAAGGA GGTTGATGAG CAGATGATCA ATGTCCAGAA CAAGAACTCA 
    TCCTACTTCG TCGAGTGGAT CCCCAACAAT GTGAAGTCCA GTGTCTGTGA 
    CATTCCACCG AGAGGCCTCT CCATGGCATC GACCTTCATT GGCAACTCAA 
    CATCCATCCA GGAGATGTTC CGGAGGGTGA GCGAGCAGTT CACTGCTATG 
    TTCAGGAGGA AGGCTTTCTT GCACTGGTAC ACTGGCGAAG GCATGGACGA 
    GATGGAGTTC ACCGAGGCAG AGAGCAACAT GAACGACCTT GTCTCTGAGT 
    ACCAGCAGTA CCAGGATGCC ACCGCCGATG AGGAGGGCGA GTACGAGGAC 
    GAGGAGCAGC AGGAGGCTGA CGACATGTAA GGTGGCTTTT GCTTGGTGGT 
    TCTAGGGCAG GGTTTTGTGT GCTTGGTGTT TCCGTCTTAC ATTATCACCG 
    TATTACCGCC TCGTACGCCA CCGCCCGCTT CCTATGTCTT CGCTTTGTTT 
    TTTCGTCTGT GCTATGGGAA CCTTTTTGGG TACTGTATTA CTTGATGCTG 
    GTCTGCGATT GTTGATATTT CGGATGAATT TTACCTTT

    Gene models with high sequence identity

    1. AT5G12250.1 [+] show detail - beta-6 tubulin
      E-value: 0; Score: 836.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tubulin/FtsZ, GTPase domain 2.9e-123
    Gene3D Tubulin/FtsZ, 2-layer sandwich domain 6.3e-41
    Gene3D no description 3.9e-23
    PatternScan Tubulin, conserved site 0
    superfamily Tubulin/FtsZ, N-terminal 2.9e-109
    superfamily Tubulin/FtsZ, C-terminal 6.7e-80
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Beta tubulin 6.3e-122
    FPrintScan Tubulin 2.6e-105
    FPrintScan Tubulin 2.6e-105
    FPrintScan Tubulin 2.6e-105
    FPrintScan Tubulin 2.6e-105
    FPrintScan Tubulin 2.6e-105
    FPrintScan Tubulin 2.6e-105
    FPrintScan Tubulin 2.6e-105
    FPrintScan Tubulin 2.6e-105
    FPrintScan Tubulin 2.6e-105
    Coil coiled-coil 0
    HMMPanther Beta tubulin 1.3e-253
    HMMPanther Tubulin 1.3e-253
    HMMSmart no description 2.5e-70
    HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 5.9e-42
    HMMPfam Tubulin/FtsZ, GTPase domain 8.1e-72
    HMMPfam Tubulin/FtsZ, 2-layer sandwich domain 3.7e-48

    See the detailed result >

    AT5G12250.1

    Model type
    Protein coding
    Short Description
    beta-6 tubulin
    Curator Summary
    Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.
    Computational Description
    beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR