K16926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16926

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16926

Determination of introduced cDNA(s)

  • J013053E16 - Rice Full-length cDNAs - Original: J013053E16

    full reading [+] show sequence

    Nucleotide sequence: J013053E16 - full reading 
    GAATGACTTC TTCTTCCTCC TCCTCTCCAC AGTCCACACT GTTCATCTCC 
    TCCTCCCCTC CCTCCCAATT CGATTCCCAA ATCCCAAAAT TGACCACCCA 
    AATCCGCGCC AATCCATGGA TTGGATGCCT CCTCCGAAGC CCACCTCGCC 
    GCGCTCCCCT CCCCTCCTCT GGGACTGGGC CGACGCCGCC GTGCCGGGCT 
    CCTCCTCCGG CGAGGTATCC GCCGCCGCCG CCGCCGCCGC GGCTCATCCG 
    GGAAGGCGGC GGAAGGAGAA GCGAGGCAGG GCGGAGGAAG GAGGAGGTGG 
    TGGTGGGGAG GTGAGGTGCC AGGTGGAAGG GTGCGGGGTG GAGCTCGTCG 
    GCGTCAAGGA CTACCACCGG AAGCACCGCG TGTGCGAGGC CCACTCCAAG 
    TTCCCCCGCG TCGTCGTCGC CGGCCAGGAG CGCCGCTTCT GCCAGCAGTG 
    CAGCCGGTTC CATGCGCTCT CGGAGTTTGA TCAGAAGAAG AGGAGCTGCA 
    GGAGACGCCT GTATGACCAC AACGCTCGTC GGCGGAAGCC CCAGACCGAC 
    GTGTTCTCCT ATGCATCGGC AAGGCCGCCG TCGTCATTAT TATTTGATGA 
    TAACCGACAA ATAAGTTTTG TCTGGAACAA AGCTCCACTC AGCCATGTAA 
    GGCCTTTCGC AATTTCTCCA TGGGAAAGCT CATCTGAAGT TGGGACAACT 
    GATGGACATA TTTATTTGGA TAAATCTCAC ATATCCAAAT CTCTCCCAGC 
    ATTTAACACC GACATAGATG AGCTCTTACC AATGAAAGAC TTCTCTGCAG 
    CCACTATTTG GATGTTCTTC GGTGTCCTTT TTATCCGAAC TGCGCAGGAG 
    AGCTGCATGT CATTTCATTA AGGAGAAAAC AATGTACATA TTTTGATGGA 
    AGAATGACCA TTATTCCATT TTGCAGGTCC GGACGCATCT TTAACTGCTT 
    CAAAATTTGA TGGAGCACCG GATCTTCAGC GTGCTCTCTC TCTTCTGTCA 
    TCTAGTTCTT GTGGATTACC TGATCCTGTA CAGCAAGCAT CTCGCGTCAT 
    CCAATTCACA GGCGCCAGCC AAAACAACCG GGAACTTCCT CCACTTAATG 
    GAGGGAATTC TGCTTCAGCA TCATGTGCCA ATGTACAAAC TATAGCACAA 
    CCGGCTCAGC TGGTTCGTTT TACCATGAAT GCTAGCAGCA ATGCTTGTCA 
    GTCCAATTTC TTCGGTTTAA ACCAGATAAA CTAAAGGCCT GGACTGAGAG 
    CCCGTCGTCG ATTTCGACCA ATATCCACCA AGGTGGCCTT GAGAAGATAC 
    AAGAATTGCT TCTATCAACT ATCAGAGTGC AAACAATGTC ACAGTTAATG 
    TTGTCATCAT AAATACCGGT ATTGGTCTCC CCTGAACTAA AATCGAACGG 
    AGTGATGGCT TGCTTGTGTT TTCGATAATC GTTATGCAGT TCTAATTTTT 
    TTTCTATTGT TTTCTGCCAA TGTACCGATT TTCAAACTGT GGGTCTTGTC 
    ATTTATACTT GTACAACCTA ATGTCAAAAT GTCATGTATC TTTG

    Gene models with high sequence identity

    1. AT5G43270.3 [+] show detail - squamosa promoter binding protein-like 2
      E-value: 2e-32; Score: 137.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Transcription factor, SBP-box 3.7e-25
    ProfileScan Transcription factor, SBP-box 31.667
    HMMPfam Transcription factor, SBP-box 2e-37
    superfamily Transcription factor, SBP-box 3.8e-40

    See the detailed result >

    AT5G43270.3

    Model type
    Protein coding
    Short Description
    squamosa promoter binding protein-like 2
    Curator Summary
    member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.
    Computational Description
    squamosa promoter binding protein-like 2 (SPL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR