K16704

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16704

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
T2 rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Original: K16704

Determination of introduced cDNA(s)

  • J033135H16 - Rice Full-length cDNAs - Original: J033135H16

    full reading [+] show sequence

    Nucleotide sequence: J033135H16 - full reading 
    GTATCAGTCG CTCGCTCGCT CATGCGGCCG GCGACGAATC AACCAGCAAA 
    CTAAAAAAGC GAAGGGAAAA AAGGAGAGAA AAAAAAAACC AACTCCCTCC 
    TCCCCGTTCT CCAGATCCGC ACCGCCACCG CCGCCGCCGC GCGATCCTCC 
    GCCGCGCCTA CCGGTCGGGG ATTGGTGGAG GAGGCGCGCC GGGTGGGCTG 
    TGGAGTAGGG GGAGGAGGAG GAGGAGGGTG TGAAGCGGAG CGACGAGATG 
    GCTGCGCCGC CGGCGAGGGC TCGGGCGGAC TACGACTACC TCATCAAGCT 
    CCTCCTCATC GGGGACAGCG GTGTTGGCAA GAGTTGCCTT CTCCTGCGGT 
    TTTCTGATGG TTCCTTCACT ACAAGCTTTA TTACCACAAT TGGTATTGAC 
    TTCAAAATTA GAACAATAGA GCTGGACGGG AAGCGTATTA AGCTACAAAT 
    TTGGGACACA GCTGGCCAAG AACGTTTCCG GACAATTACC ACTGCGTACT 
    ACCGTGGAGC CATGGGTATC CTGCTTGTTT ATGATGTCAC CGACGAGTCA 
    TCTTTCAACA ACATTCGGAA CTGGATTCGG AATATTGAGC AACATGCCTC 
    TGATAATGTC AACAAAATTT TGGTTGGCAA CAAGGCTGAT ATGGATGAGA 
    GTAAAAGGGC TGTCCCTACT GCGAAAGGCC AAGCACTGGC TGATGAGTAT 
    GGCATCAAAT TTTTCGAAAC TAGTGCGAAG ACAAACCTCA ACGTGGAGCA 
    AGTTTTTTTC TCCATTGCAC GTGACATTAA GCAGAGGCTT GCTGAGACCG 
    ACTCCAAGCC TGAGGACAAG ACAATCAAGA TTAACAACAA GACGGATCAG 
    GGTGCCGACA AACCAGCAGC TTCTGGATCT GCATGCTGCG GCTCCTGAGG 
    AGACGTTCGC CTTCTCGGCC TCCATCGTTT ATTATTTGAC ATTGTTTGTT 
    CCCTGTCTTG CTGTTATAGG AAGAATGTCA AGAAGACACA CTATGATACG 
    GATCTGGTTG TACCTATCTT TGCTTCCATT CTTTGAAGCA ACTACTCATG 
    CTTTTGACGT AGCTGTTGCA ATTGCCTGGG GGGCTACTAC TGTACGCTGG 
    ATTTCAATCC GTTGAACTGC AAGCTACAGT GTGTAACGTA GTCCATGCTG 
    TATTGCTATT GGGTTTTCAG TTAATCAATG GATGCATGGA ATAGAGTGAT 
    GCTGTTCCTG CATTTTGGCT

    Gene models with high sequence identity

    1. AT3G46060.3 [+] show detail - RAB GTPase homolog 8A
      E-value: 1e-82; Score: 303.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RAS-LIKE GTP-BINDING PROTEIN 5.5e-103
    HMMPanther RAS-RELATED GTPASE 5.5e-103
    Gene3D no description 1.2e-68
    superfamily P-loop containing nucleoside triphosphate hyd 1e-66
    HMMTigr Small GTP-binding protein 1.6e-30
    HMMPfam Ras 1.9e-66
    FPrintScan Ras GTPase 1.6e-46
    FPrintScan Ras GTPase 1.6e-46
    FPrintScan Ras GTPase 1.6e-46
    FPrintScan Ras GTPase 1.6e-46
    FPrintScan Ras GTPase 1.6e-46
    HMMSmart ADP-ribosylation factor 0.0044
    HMMSmart Ras small GTPase, Rab type 2.2e-106
    HMMSmart Ras small GTPase, Ras type 3.7e-35
    HMMSmart Small GTPase, Rho type 4.5e-14
    HMMSmart Ran GTPase 1.4e-09
    ProfileScan Small GTPase 38.096

    See the detailed result >

    AT3G46060.3

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog 8A
    Curator Summary
    small GTP-binding protein (ara-3)
    Computational Description
    ARA3; FUNCTIONS IN: GTP binding; INVOLVED IN: ethylene mediated signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT5G59840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR