K16608

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16608

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16608

Determination of introduced cDNA(s)

  • J013156D15 - Rice Full-length cDNAs - Original: J013156D15

    full reading [+] show sequence

    Nucleotide sequence: J013156D15 - full reading 
    GACTCCACGC ACCATCTTCT TCTTCTTCTT CTTCGTCTTC GTCACCGCCA 
    GCCAACCACC TGACAAAGCA AGCAATCGAG CTGAGCACCC CAACCCAACC 
    CTAGGCAGAG GCTGAGGCTG AGCGAGATCG CGGGCATGAG CTCCGCGCCG 
    CAGCAGTTGC TCGATTCGTC GTCTCCGGGG CCGGGGCCGG GGCCGGAGGT 
    GGAGGACGAC GGGGGAAGGA GGGTGAGGAA GCCCTACACC ATCACCAAGT 
    CGCGGGAGAG CTGGACCGAC CCCGAGCACG ACAAGTTCCT CGAGGCGCTG 
    CAGCTGTTTG ATCGTGATTG GAAAAAGATT GAAGCATATG TTGGCTCTAA 
    GACTGTAATA CAGATCAGAA GCCATGCACA GAAGTACTTT TTGAAGGTTC 
    AAAAGAATGG AACAGGCGAG CATTTGCCCC CTCCTAGGCC AAAACGGAAG 
    GCAGCACATC CATACCCACA TAAAGCCTCA AAAAGAGCCC CTCAAGTTGT 
    CCTACCACAA CAAGCTTCTC ATCTAATGGA GCAAGGCTGT CTTATACCTA 
    TGGACATATC TCCTGTTGCT AGAAACTTTA ATGCAAATGA TGTATTTTCT 
    TCCTGGGATA GTGCTCTTGC CCAAAGTTTC AGTCCAAGGC ATACACATGG 
    TGCAGCAAAT AATTGTTCTA GTAGCGTAGA GAGCCAATCT GGAACTTGTC 
    CAACTTCTGA GGCAATTGAG CAAGAGATCA TGCTTCCAAC GCTGCGTGCC 
    ATGCCAGACT TTGCTCAAGT ATACAACTTC CTGGGAAGCA TATTTGATCC 
    AGAGACAAGT GGGCATCTTC AGAGGTTGAG AGAGATGGAT CCAATCGATG 
    TTGAAACAGT GCTGTTACTG ATGAAAAATT TGTCAATAAA CCTGACAAAC 
    CCAAACTTTG AAGCACATAG GAAGGTACTC GCATCACATG GATATGGCAT 
    GGACCAAGTG AAGCATGAGA ATTTAGGGGA TCTGGGATCA ACTCACACCC 
    TTCATCTCCC ATTCATGGTA ACGACCAAAT GAAAGAACAC CACCACAATC 
    AGCATCCATT GGGGGTAACA AGCAAACCCT GCTATCAGCA CCCAGTGGCG 
    ATTTTGAGTG AATCCGAAAT ACCACATTGT GTTAGCGACA TGTTGTACTG 
    TCACGTTGTA CATATAGCAG TTAGTAATGC TCTAACCATT AGGCTAGTTT 
    TGCTCATCAT CTAGATGGCC AGGTAGTTTA TGTGCCTGTG ATTTTTTTTT 
    TTTGCCTTTC CTTTTATTTT AACTCATCTA TGAACCTGCC ACATAGTGGG 
    GTATGTTGTA TCACGGCATA TGCATGCCTT TTGTTTTTAA CCCCCTTTGA 
    GAGTTTGGTA CTTTGGTTGC ATGTATTTTT GGCCGTGTAT GCATATATGT 
    ATATGCGTGT GATTATGG

    Gene models with high sequence identity

    1. AT5G52660.2 [+] show detail - Homeodomain-like superfamily protein
      E-value: 1e-65; Score: 247.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart SANT, DNA-binding 7.1e-10
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 4.5e-27
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 14.234
    superfamily Homeodomain-like 1.5e-15
    HMMPanther SWI/SNF COMPLEX-RELATED 3.3e-05
    HMMPfam Myb, DNA-binding 4.2e-10

    See the detailed result >

    AT5G52660.2

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Computational Description
    Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1360 Blast hits to 1350 proteins in 120 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 8; Plants - 1059; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR