K16533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16533

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16533

Determination of introduced cDNA(s)

  • J013052N01 - Rice Full-length cDNAs - Original: J013052N01

    full reading [+] show sequence

    Nucleotide sequence: J013052N01 - full reading 
    GGCGCGCATC GCCTCGTCGG AGGAGGAGGA GGGAGATCGG AGATGGGGGC 
    GGGGGAGGGA GGGGAGGAGC AGTCGCTGGC GCTGACGCCG ACATGGGTGG 
    TGGCCGGAGT CTGCTTCATC ATCGTCGCCA TCTCGCTCGC CGCCGAGCGC 
    CTCCTCCACC GCCTCGGCAA GGTGCTAAAA TTCAATGGGC AAGAAGCACT 
    GTTTTCTGCT CTTCAGAGAG TCAAAGAAGA GTTGATGCTT CTGGGTTTCA 
    TTTCCTTCCT GCTTAGCGTC TTCCAAAAAT TTATCAATCA CATTTGCATC 
    CCGGAGAGTG CTGCACATCT CATGCTTCCA TGCATTACTA GAGAGACGTC 
    CGAGACCACA GAAGATGCTT CCAAACTTTG CAAGCGAAAG GGTGAAGTTC 
    CTATGCTATC TGAAGAGGCT TTGCATCAGC TGCACATCTT TATCTTTGTC 
    CTTGGTATTG TCCATGTTGT ATTTTGTGTT ACAACATTGT TACTTGGTGG 
    AGCCAAGATG AAAAAATGGG AGAAATGGGA GAAAGAAATT CAACAAGGAA 
    GAACCAAGGA GCGACCAAAG AGGCCAGGCT GGATGAAATT CATTGTTGTA 
    AGATGTGCCA TCTCATTCTT GAAGCAGTTT TATGATTCTG TTGGTAAACC 
    TGATTATCAA GTACTTAGAT CAGCTTTTGT TCAGAGGCAC TACCCAAACC 
    GTCCTGATTT TGATTTCCAC AAGTACATGG TTCGTGCTCT TGAGCATGAT 
    TTTAAAGAAG TAGTTGGAAT CAGCTGGTAC CTATGGCTTT TCGTTATTGT 
    CTTCCTGCTA CTGAATATAA ATGGGTGGCA CACATACTTC TGGCTGTCTT 
    TCTTGCCCTT AATTCTCCTA CTCATTGTTG GCACAAAGCT GGAGCTCATA 
    AGCACTAGGC TGGCACAAGA GGCAGCAGAC TGCCCAGATG AAGCAACAGG 
    AAACCCCTGG ACAAAGCCAT GCAAGGAGCA CTTCTGGTTC AGCAAGCCTA 
    GGATTGTCCT CCATTTGATC CACTTCATCC TGTTCCAGAA CTCCTTTGAG 
    ATGGGTTTTT TCTTCTGGGT TCTGGCAACA TATGGGTTTG ATTCATGCAT 
    CATGGAGAAC AAGATTTATG CCCTCCCCAG ACTTGCTATT GGAATCATCG 
    TCCAGGTGCT CTGCAGCTAC AGCACGCCGC CGCCGCAAGG CCCACGGCCG 
    TAGATATTAT CGTATACGGA AGCCCGAGCC GCCGGCGGCC GGTGCCCACG 
    GCGGCCGGCG TGGCGAGCCG GCGGCATGGA GACGTGTTGC TAGCTGAGTA 
    GGTAGCTACC TTGCGCGACA CCGTTAGACC AATCGCTACG TGCCACGTGT 
    ATGGAGTTTG CTGATGAGCT GTACAAAATG GAGTTAATTA TTAAAATTGT 
    ACATGCATGC AAACTTATGG AATTGGACAC ATATCATATT TTTGGCATAC 
    ATGTACTCTT CTGTGTTATA GTAC

    Gene models with high sequence identity

    1. AT4G02600.2 [+] show detail - Seven transmembrane MLO family protein
      E-value: 3e-101; Score: 365.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G02600.2

    Model type
    Protein coding
    Short Description
    Seven transmembrane MLO family protein
    Curator Summary
    A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
    Computational Description
    MLO1; FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT2G44110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR