K16040

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16040

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16040

Determination of introduced cDNA(s)

  • J013058J01 - Rice Full-length cDNAs - Original: J013058J01

    full reading [+] show sequence

    Nucleotide sequence: J013058J01 - full reading 
    GAGGTGCCGT ATGTGGGGAG CGAGATCCAG CAGCAGACCA TGTCGCTGAT 
    TTACCTTGGT GTGCCGGAGG AGAACATCCT GCAGACACAT ATGGAAGGGA 
    TACATCGTTA CTGCGGCTCG GACGCGAAGG TTGATAGCCT CGCTTCACAG 
    TATGTCCAGA AGCTTGGGAT GATCATCAAG AGGTCTACGC ATGAGCTGGA 
    TCTTGATGAC CAGGCTAGCA TCAGAATGTG GGTTGATAGG AACAAGAAGT 
    CTGTGTTCTA CTACCAGGAT TCGACGGATA CAGATGCATT TGTTCTAGGG 
    ATCCAGACAG AGTGGCAACT GCAGCAGATG ATTCGCTTTG GTCATCAGGA 
    TCTTTTGGCT TCTCATTCCT CGTTTGGTGT TAGCAAGCTG AAGTATCCAT 
    TGCACACACT CCTTGTCTTT GACTCAAGAC AACATGCTCT ACCTGTTGCG 
    TGGATTATAA CCCGATCAGT TACCAAGCAA GACACTTTGA GATGGATGAA 
    AGCACTTACT GAGAGAATAT ATTCTGTTGA TTCCACCTGG AGAATCGGTG 
    GATTTGTAAT TGATGACCCA GCTTCAGAGC TGGATCCAAT CAGGGATGTA 
    TTCTCTTGCC CAATTTTGTT TTCTTTATGG CACATTAGGA GAACCTGGCT 
    TAAAAATATA ATCAAGAAAT GCAGCAACAG TGAGGTACAG CGGGAAATGT 
    TTATGCAACT AGGAAAAGTT ATGTACAGTA TCTGGAGTGA GAAAAATCCC 
    ATGGATGCTC TTGAGCAATT ATTTCAAGAC TTCGTTGACC AAACCACCTT 
    CATACAATAT TTCAAGTCCT TTTGGGTTCC CAAATTGGAG ATGTGGATTG 
    ACACCATCAG AAGTCTTCCA CTAGCAAGTC AGGAATCATC AGGCACTATT 
    GAAGGTTACC ATCTAAAGCT CAAGGTTAAA GCATATGATG ACTCACAGCT 
    TGATGCTCTC CAGCGTGTGG ACTGGTTGGT GCATAAGCTC ACAACAGAGC 
    TCCATTCGAG TTACTGGCTC AATCTGTATG CGGATGAAAG CGGTTCATTT 
    CCTGAGGTGA AAGCAGAGTA CATTGCGTCC ACTTCATGGC ATAGAGCGCT 
    GCAGATACCT GACGATGCTG TTATATTTGA TGACAAGGAA CCATTTTCAG 
    CAAAGGTGAC AAGCCAGAAG GATACTAGTC AGATGTGGAC TGTCTGGAAT 
    CCTGGGTCTG AGTTTTCTCT TTGTGATTGT TCGTGGTCAA TGCAGGGCAA 
    CCTATGTAAG CACATCATAA AGGTTAACAT GATGTGTGGA CCACGCAAGG 
    ATTTCCAGCC CTCGCTCTCA TTTCAATCGT TTCAGCGTGT CCTACTTGAT 
    CTGTGGCAAA AACCCATGGA TGATTCATTC TCACTCGATC TGTCAGTAGC 
    ATGGGTTATG CAAATGCAGG AGAGGATCCA GAAGGTGACT GAGCTTGCTA 
    CCGCTGACGG CATTGCGGAA GTATCTAACA GATTGCCGAT TCAATGGACA 
    AACAAGAAAG GGAGGAAAGT AGCTGCAAAG CGCACCAGCC CTTTACGTGT 
    TCTTCCTCAC TCCAATGGTA TTGTGCAAAA GGATTTCACA CCCAAGAAGA 
    ACAGAAAGAG AAAGAGGTTG TCAACAGTCT CGGGTTAACA GTACTCCAAT 
    TGTTCTTGTC CAGAGAGTTA TTTTTCTCTC TGTGTAATTA GATGGCTAAC 
    CGTCTTTTGT TTGTTTTCTG TCTCAACTAG TTACTTTTGG TATAGGCATT 
    GGTTACTAGG ATGATCACCT CACGTTTCTG AAACCAATTC TTCTGTTGTT 
    TAGTTGGATA TAATTATTCA GGCAGCATAA GAAATACATC GAATCAGTCT 
    CTCTGGTC

    Gene models with high sequence identity

    1. AT1G60560.1 [+] show detail - SWIM zinc finger family protein
      E-value: 0; Score: 692.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G60560.1

    Model type
    Protein coding
    Short Description
    SWIM zinc finger family protein
    Computational Description
    SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 86 Blast hits to 86 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR