K16007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16007

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16007

Determination of introduced cDNA(s)

  • J023114I07 - Rice Full-length cDNAs - Original: J023114I07

    full reading [+] show sequence

    Nucleotide sequence: J023114I07 - full reading 
    GAGAATTCAG CGAGAGAGAG CGAATCAGCC ACTGCACTTC TTGTTCTTGT 
    TCTCTTCCTC CTCCGGAATC CGATCCATCC ATTGGCCGCC GCCGCCGCCG 
    CCGCCTCGTG CGTCGCGTGT TCGTGTCCAG AGACGATGGG CAGCCTCGCC 
    GCCGAGAAGA CCGTCACCGG GTGGGCCGCC AGGGACGCCT CCGGCCACCT 
    CACCCCCTAC AACTACACCC TCAGGAAGAC TGGGCCTGAA GATGTGGTGG 
    TGAAGGTTTT GTATTGTGGT ATCTGCCATA CTGACATCCA CCAGGCCAAG 
    AACCACCTTG GTGCTTCCAA GTACCCCATG GTCCCTGGCC ATGAGGTGGT 
    CGGCGAGGTG GTGGAGGTCG GGCCGGAGGT GACCAAGTAC AGCGCCGGCG 
    ACGTCGTCGG CGTCGGCGTC ATCGTCGGCT GCTGCCGCGA GTGCCATCCG 
    TGCAAGGCCA ATGTGGAGCA GTACTGCAAC AAGAGGATTT GGTCCTACAA 
    CGACGTCTAC ACCGACGGCC GGCCAACCCA GGGCGGCTTC GCCTCCGCCA 
    TGGTCGTCGA CCAGAAGTTT GTGGTGAAGA TCCCGGCGGG GCTAGCGCCG 
    GAGCAGGCGG CGCCGCTGCT GTGCGCCGGG CTGACGGTGT ACAGCCCACT 
    GAAGCACTTC GGGCTGATGT CGCCAGGTCT CCGCGGCGGC GTCCTGGGGC 
    TCGGCGGCGT GGGGCACATG GGCGTGAAGG TGGCCAAGTC GATGGGGCAC 
    CACGTGACGG TGATCAGCTC GTCGGCGAGG AAGCGCGGCG AGGCCATGGA 
    CGACCTGGGC GCCGACGCCT ACCTCGTCAG CTCCGACGCG GCGGCGATGG 
    CGGCCGCCGG CGACTCGCTG GACTACATCA TCGACACCGT GCCGGTGCAC 
    CACCCGCTGG AGCCGTACCT GGCGCTGCTG AAGCTGGACG GGAAGCTGAT 
    CCTGATGGGG GTGATCAACC AGCCGCTGAG CTTCATCTCG CCCATGGTGA 
    TGCTCGGCCG GAAGGCCATC ACCGGCAGCT TCATCGGGAG CATGGCCGAG 
    ACGGAGGAGG TGCTCAACTT CTGCGTCGAC AAGGGGCTCA CCTCCCAGAT 
    CGAGGTCGTC AAGATGGACT ACGTCAACCA GGCCCTCGAG CGCCTCGAGC 
    GCAACGACGT CCGCTAGCGC TTCGTCGTCG ACGTCGCCGG CAGCAACATC 
    GACGACGCCG ACGCGCCGCC CGCCTGATCG CCGCCGTGCA CCCTCATGGC 
    AGCATCCGTA TGATCCGTTC TTGAACTTGT TTGTGTGAGA CTCTGACGAC 
    TTGTCCATGT AACGTCCGTG TGCCTTTCCG GTATAAATTC GGCCTCGCAA 
    TATATGGGCC ATTTTGCATT TCCGATCAAA ATCATGCTTG CGTTCC

    Gene models with high sequence identity

    1. AT4G34230.1 [+] show detail - cinnamyl alcohol dehydrogenase 5
      E-value: 8e-113; Score: 404.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0
    HMMSmart Polyketide synthase, enoylreductase 4.5e-06
    superfamily GroES-like 3.8e-50
    superfamily NAD(P)-binding domain 2.8e-39
    HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 2.4e-104
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 2.4e-104
    Gene3D no description 2.9e-57
    HMMPfam Alcohol dehydrogenase GroES-like 1.4e-27
    HMMPfam Alcohol dehydrogenase, zinc-binding 1.7e-19

    See the detailed result >

    AT4G34230.1

    Model type
    Protein coding
    Short Description
    cinnamyl alcohol dehydrogenase 5
    Curator Summary
    Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
    Computational Description
    cinnamyl alcohol dehydrogenase 5 (CAD5); CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT3G19450.1); Has 41203 Blast hits to 41171 proteins in 3032 species: Archae - 764; Bacteria - 27799; Metazoa - 1384; Fungi - 3121; Plants - 2810; Viruses - 3; Other Eukaryotes - 5322 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR