K15946

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15946

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15946

Determination of introduced cDNA(s)

  • J023002I18 - Rice Full-length cDNAs - Original: J023002I18

    full reading [+] show sequence

    Nucleotide sequence: J023002I18 - full reading 
    GCGAGGGGAG AGAGAAGAGA GAGTGAGGTT GTTGTTGCAT CTATATGTTT 
    TTTGGTTTGT GAATTTTTTA ATATCTCTCT GTGTGTGTTT GTGTCATATA 
    TGAGTTTGTG GGTGTGGGTG TTTGCGAGCT TTTGTTCGTA TGCTTTTTTA 
    CTTGTTTTGA GTGCAACTGT TTGTTTGGAT TTCCCTGTCC ACTTTGTTCT 
    TTTGTTAATC TGCGGAAGAG TCCTAGAGCG GCCGAGGCCT TGGAGTTTTT 
    CTCGGCTTCT TGTCGATTTG TTTGTTGTTT CAGATCAATT CATTCCAAGT 
    GAATACATAT GAGATAGGTA TAGCCAGCCA TTACTCCTCA GGGATTTTTT 
    TGGGGGCGTC TCCTTCCGCT CTTTCCCTTT GGTTCTTTTC GTCCTACCTC 
    CTTAATTTGT CATCTCGGGG GAGCAGAAAT CTTTCCTGAT CTTCCTCCCA 
    TGGTTGCTGC TTTCCTGCTT TGCCTTTGCT TGGTTGCTTG TGTTGTGTGC 
    TGTGCTGTGC AGTGGCGATG ACTGCTTTGC TGCTGCTGTT CTTAATTGCT 
    GCATGCCATG TCTCACTTGG AAAGTATTTT TTTGCTTTGC TTTGTTTGTT 
    TGTTTCAGCC AGGGGGGAAG AAGGAAGGAA GAAGAAGAAC ACTGCTGCCA 
    ATCCGAGGAA CAATCCAACG GGGGCAACAG AAAAGGAAAT TTTCTGCTCC 
    TGCGGTTGAG TTGGTAAAAT TTGGGAGGTG ATGGCATCGA ATTCATCGGC 
    TGCAGCTGCG GCGGCGTTCT TCGGGATTAG CAGGGATGGG GACCAGCATG 
    ACCAGATTAA GCCGCTGATA TCACACCAAC AGCACCAGCA CCAGCAGCAG 
    CAGCTGGCAG CGTCACTGAC CGGCGTGGCA ACAGCGGCGC CTACTGCGGC 
    GTCCAGCCAA GGCGCACCGC CGGCGGCGCC ACCGGCCAAG AAGAAGAGAA 
    ATCTACCAGC AGACCCGGAC GCGGAGGTGA TAGCGCTGTC GCCCAAGACG 
    CTGCTGGCGA CGAACCGGTT CGTGTGCGAG GTGTGCAACA AGGGATTCCA 
    GCGGGAGCAG AACCTACAGC TGCACCGGCG AGGCCACAAC CTGCCGTGGA 
    AGCTGAAGCA GAAGAACCCG GCGCAGGCGC AGCGCCGCCG CGTGTACCTG 
    TGCCCGGAGC CGACGTGCGT CCACCACGAC CCGGCCCGCG CCCTCGGCGA 
    CCTCACCGGC ATCAAGAAGC ACTTCTGCCG CAAGCACGGC GAGAAGAAGT 
    GGAAGTGCGA CAAGTGCTCC AAGCGCTACG CTGTCCAGTC CGACTGGAAG 
    GCCCACTCCA AGATCTGCGG CACCCGCGAG TACCGCTGCG ACTGCGGCAC 
    CCTCTTCTCC AGGAGGGACA GCTTCATCAC GCACAGGGCG TTCTGCGACG 
    CGCTGGCGCA GGAGAGCTCC AGGCTGCCGC CGACGAGCCT CAGCAGCCTC 
    ACCAGCCACC TGTACGGCGC CAGCAACGCC GGGAACATGG CGCTCAGCCT 
    CTCCCAGGTG GGCTCCCACC TCACCACCTC GCTCCAGGAC GGCGGCGGCC 
    ACCACCACCA CCCGTCCCCC GAGCTGCTCC GCCTCGGCGG CGCGGGCGGT 
    GGCGGCGGGG CCGGCGGCGG GAGCAGCATC GCCGCGCGGC TCGACCACCT 
    GCTGTCGCCG TCGGGCGCGT CTGCCTTCCG CCCCCCGCAG CCGGCGTTCT 
    TCCTCAACGC CGCCGCGGCG GCGGCGGCGA CTGGGCAGGA TTTCGGCGAC 
    GACGCTGGCA ATGGGCAGCA CTCGTTCCTG CAGGCCAAGC CGTTCCATGG 
    CCTCATGCAG CTGCCCGACC TCCAGGGCAA TGGCGCCGGG GGCCCCGGCG 
    CGCCGGGGCC TAACCTCTTC AACCTCGGCT TCTTCGCCAA CAACGGCAAC 
    AGCTCGGGGT CTAGCCATGA GCATGCCAGC CAGGGGCTGA TGAGCAATGA 
    CCAGTTCAGC TGTGGTGCAG GCGGCGGCGG CGGTTCTGAC GCGTCGGCGG 
    CGGGGATCTT CGGCGGTAAC TTCGTTGGTG GCGACCATGT TTCTCCTGCA 
    GGGCTCTACA ACGATCAAGC GGCGATGCTG CCGCAGATGT CGGCGACGGC 
    TCTCCTCCAG AAGGCGGCGC AGATGGGCGC GACGTCGAGC GCGAACGGCC 
    CGGGCTCCAT GTTCCGTGGC TTCGTCGGCT CGTCGCCGCA CATGCGGCCG 
    GCGGCGCAGC ACATGGACCA GAGCGACGCG CACCTCAACG ACCTGATGAA 
    CTCCCTCGCC GGCGGCGGCG TCAACGCCGC CGCCATGTTC GGCGGCACCA 
    ACGGCGGCGG CGTCCCTGGC GCGGGGATGT TTGATCCGAG GCTGTGCGAC 
    ATCGAGCACG AGGTGAAGTT CAGCCAGGGC GGCGGAGGCG GAGGCGGCGC 
    CGGCGCCGGC ACCGGCGACG GGACGCGGGA TTTCCTCGGC GTCGGCGGTG 
    GCGGCATCGT CCATGGCATG TCGACGCCGA GAGGAGACCA CCACCAGAGC 
    AGCAGCGACA TGAGCTCCTT GGAGGCCGAG ATGAAGTCCG CATCGTCCTT 
    CAACGGGAGA AGGATGCCAT GAATCCACCA TGATCAAGTC ATCGATCGAG 
    CTTACACAAG CCGTCAAGCT CCGATCGATC GGTAGTAGTA CCAAGTGAGA 
    GTCTGAGACT TGAAGCAATG CAACTGCAAC TCTGGGGGAT TAACGCATGC 
    GCGCATGAAT TGGGGAGGAG CAAGCTAAGG TTATAGTATA CTCATCATAT 
    ATAGCCTAAT GTCGAGTTAG CAACTAAGTT TGATCGATCG CATGAGCTGG 
    TGTGCAAGCA TGCATGGGAT AAAAGCTATA CTAAGCTAGC TCTTCAAGCA 
    TATCATGACC TGGAAAACTT GGGGTTTAGT CAGGAAGAGA GGCGTCCTCT 
    CTGACTAATT AAGTAATTAA GGCTAGTGCG AGTGGACGCG TGTGATGACC 
    CTTGTTGCTC TCGGTGGGGT TGGTGTTAAT GCCGTTGCTA TTGTTCTTGT 
    TGTTTGTTTT CACCTCCTTG TAGTTGGATC CTTGTTGGGT TAAGTATAGT 
    TCCATAGAGC CAATAAGAAT GTTCAATTTG TAGCTAGCTC AATGGGGGAA 
    AGAGAGTGGC TTAATTTCCC CTCGTTCTCT TCCTCTCTTT TTTTTCCCTT 
    TCAATTTCTT GTTTTTATTA ATTAATTACT GTTCCTTGTA GCAAAAAAAA 
    CCATATATTG CCCTGCAAAG TGCAATTGAT CATGTTGGCT CAAATGC

    Gene models with high sequence identity

    1. AT2G02070.1 [+] show detail - indeterminate(ID)-domain 5
      E-value: 5e-84; Score: 310.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 6.8e-11
    HMMPanther SERINE/THREONINE-PROTEIN KINASE RIO 6.8e-11
    HMMPfam zf-C2H2_jaz 4.8e-05
    superfamily C2H2 and C2HC zinc fingers 3.5e-05
    superfamily C2H2 and C2HC zinc fingers 4.4e-05
    HMMSmart Zinc finger, C2H2-like 0.0041
    HMMSmart Zinc finger, C2H2-like 140
    PatternScan Zinc finger, C2H2-type 0
    ProfileScan Zinc finger, C2H2-type 11.094

    See the detailed result >

    AT2G02070.1

    Model type
    Protein coding
    Short Description
    indeterminate(ID)-domain 5
    Computational Description
    indeterminate(ID)-domain 5 (IDD5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1); Has 61158 Blast hits to 25844 proteins in 587 species: Archae - 8; Bacteria - 480; Metazoa - 52168; Fungi - 1154; Plants - 982; Viruses - 10; Other Eukaryotes - 6356 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR