K15938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15938

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15938

Determination of introduced cDNA(s)

  • J023144G12 - Rice Full-length cDNAs - Original: J023144G12

    full reading [+] show sequence

    Nucleotide sequence: J023144G12 - full reading 
    GACGAACAAG CGAAAGTAAA CGCGACGGAG AAGAACCTTC CCCACGTTGG 
    GTTGGATTGG TCAAGGCGGC AACGAACCGA AGGAAGGAAG GGAAGCATCT 
    GGGCTACAGG TCCACGCGAT CGATTGTTCG ATCGATCTCG GATTGATCGC 
    TTTGTGATTG TGATTAATCT CGCGGCGACA TGGCGACGTC GTGGGCTGCG 
    CCGCCGCCGG GGTACCCGTA CGCGCAGGGT CAGGGCGGCG CCCAGCCGCC 
    GCACCCGCCG CAGTCCACGG CCGTCGCCGT CACTCCGGTC AGCAACGGCG 
    TGGGGAACCC CTACGTGATC GTCACCCCGG CCAGCGCGTC CCCCTCCACC 
    TGCCAGTCAC TAAGGAAGGC GCTGGAGCGG TACGGCAGGA AGCTGGAGGA 
    CGGCACCCGC AAGGCCGCCG ACACCACCGG CAACATCTGG CACCACCTTC 
    GGACGGCGCC GAACATGGCG GACGCGGCGG TGGCGAGGCT GGCGCAGGGG 
    ACGAAGGTGT ACGCGGAGGG CGGCCACGAC AGGGTGTTCA CGCAGGCGTT 
    CGGCGTCGTG CCGGGGGAGC AGCTGCGCAA GGCCTACGCG TGCTACCTCT 
    CCACCTCCTC CGGCCCCGTC ATCGGCACGC TCTACATCTC CACGGCCCGC 
    CTCGCCTCTG CAGTGACAGC CCCATATCCT ACCACGCCCC CGCCGTCGCT 
    GTCGCCGGCG CCGCCCCAGC TCACCCTCCT GAGGCCATCT ACAAGGTAGT 
    GCTTCCCCTG AACCAAGTGA AATCGGTGAA CCCATCCGCC AGCATGACGA 
    ACAGGGGCGA GAGGTACATC CAGATCATGA CGACGGACAA CCACGAGTTC 
    TGGTTCATGG GGTTCGTCTC CTACGACAAG GCGCTCAAGA ATCTCTACGA 
    AGCCCTGCAG CGCCGTGCGT GATCGTCGCC CACGGCCACC GCAGCTAAGC 
    TTCACTCTGA TCCTAATATA CATATCTGCC GATTTATATT CCATTGGTGA 
    ACTTGTAAGC TTCAGATCTT GCTCTGGAAT AAGTGTGACA CATCACTAAA 
    ACAAAATCTG ATGCCGTGTG CCCGCGTGTA TGATCTGTAA TTCGCTCATC 
    AGTGTAGAAT GTGCTGAATT CACTTGTTAT TGTAGATTGT GCTGAACTCA 
    CTATCCTTTT TATAATGTAC TGAATTACCT GAACATAGAT AAAACTGAGC 
    ATTAATCGCT

    Gene models with high sequence identity

    1. AT1G28200.1 [+] show detail - FH interacting protein 1
      E-value: 1e-50; Score: 85.50

     

    InterPro Scan Digest

    See the detailed result >

    AT1G28200.1

    Model type
    Protein coding
    Short Description
    FH interacting protein 1
    Curator Summary
    VirF-interacting protein FIP1
    Computational Description
    FH interacting protein 1 (FIP1); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT2G22475.1); Has 416 Blast hits to 413 proteins in 43 species: Archae - 4; Bacteria - 12; Metazoa - 9; Fungi - 9; Plants - 369; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR