K15036

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15036

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15036

Determination of introduced cDNA(s)

  • J023073K02 - Rice Full-length cDNAs - Original: J023073K02

    full reading [+] show sequence

    Nucleotide sequence: J023073K02 - full reading 
    GCGCTGCAGC TGTTCGATCG TGATTGGAAA AAGATTGAAG CATACGTTGG 
    CTCAAAAACT GTGATACAGA TAAGGAGCCA TGCACAAAAA TACTTTTTGA 
    AGGTTCAGAA AAATGGTACA GGTGAACATC TGCCTCCACC CAGGCCAAAG 
    CGGAAGGCAG CTCATCCATA TCCACAGAAG GCCTCTAAAA ATGCTTGTGC 
    AGTTTCGCCA GCTGCTATAT CACAACCCCC TCCTCTGGGG GAGCAAGGTT 
    GTGTTATGTC CATGGATACA TCTCCTGTCA TCAGAAATAC AAATGCCAGT 
    GCTGTAGTAC CCTCCTGGGA CAATTCTATT GCTCAACCTT TAAGTGCAAG 
    TCGCACGCAA GGTACAGGTG CTGTTGCTAC AAATAACTGC TCTAGTAGCA 
    TAGAGAGTCC TTCTACTACT TGGCCAACTT CTGAAGCAGT TGAACAAGAA 
    AATATGCTTC GACCACTACG TGCTATGCCA GATTTTGCAC AAGTATACAG 
    CTTTCTGGGA AGCATATTTG ATCCAGATAC TAGTGGGCAT TTGCAGACTT 
    TAAAGGCGAT GGATCCAATT GATGTTGAAA CGGTACTACT GCTGATGAGA 
    AATCTGTCCA TGAACTTAAC TAGCCCCAAC TTTGCGGCAC ATCTGAGCTT 
    GCTGTCATCA TGTAATTCTG GTGGGGACCC AATTAAGTCT GAAGGCATGG 
    AAAATCTTGG ATCTCCACAG AGTTGCCATC TCCCGTTCAT GGTAACAAGT 
    GAGTGAGGGA GAACTGCTTG TATGCGGACG AAGCTTCAGT TGTTTCCACA 
    AGACGTTCTT GTGTTCTCTT TGTACTGGAG TTGTGGACGG CTGATCCGGC 
    AGTTTACCAA CGCTAGCACG TGTTGTGGCC GTGGCATCTG TATAGCTTCC 
    AATAATGCTC TAACCCTAGG CTAGTTTTGC TCATCAATCA TGTTCATGTA 
    GATAGCCAGT TTTGTGTGCT CAGCAATTCT TTTTCCCTCG GGGTGGGGCA 
    TGGCTCGAAA TGTTTTTGTA TGTGTACATC TTTGTATACA TGTATGTAAA 
    TATGTGTGAT CATGTAATGC TTAAAGATAC TGTTGACTGA TTTGAGGTAA 
    TAATACAATA AACCAGTGGG GC

    Gene models with high sequence identity

    1. AT5G52660.2 [+] show detail - Homeodomain-like superfamily protein
      E-value: 3e-55; Score: 212.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 2.5e-06
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 11.41
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 2.2e-08

    See the detailed result >

    AT5G52660.2

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Computational Description
    Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1360 Blast hits to 1350 proteins in 120 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 8; Plants - 1059; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR