K14945

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14945

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14945

Determination of introduced cDNA(s)

  • J013088K08 - Rice Full-length cDNAs - Original: J013088K08

    full reading [+] show sequence

    Nucleotide sequence: J013088K08 - full reading 
    GAGTCATGAC TCACCTCAGT AGAGATAGAA ACTGACTACA AACTCTCCGT 
    CTTCTCCACC CAGCACAGCA TCCCACCCTT TCCTCCCCTC CGATCCAGAG 
    CTCTCCGTCC GCTTCCCGCG CTCGTGTCGC GCTTCTCCTC TCCAGCGTCG 
    CGCCGCGCCA TTGGCGTATC CGTATCCTTG CAACGCGGGC GCCGCGCGTT 
    CCACTCTCTG GTCGGTGTCC GGTGGCCGGG GGGAGGCTGC CGGTGGCGAT 
    GTGGGCAGCT TGGTCCTGAC CCTTACAGCC CTCGCTCCTG GTGTTACTGT 
    TACCTGAGCT GTTCTTGCTA CGCTGGGAGG GGAGGGGTGG CGCCGCGGCG 
    ACGCCCGCAA CCTGTTCGAC GGAATGTCTC CGCGGAAGAT GCCCAAGGAA 
    TCGCCTGGCT CGACCGGGGG AGACCGCATA GGGGACCTCC CGGATGAGGT 
    GCTCCACCAC GTGCTCTCCT TCCTACCGGC GCAGGAGGCT GTCCGGACGT 
    GCCTGCTGGC TCGGCGATGG CTCCACCTCT GGAAGTCCGC CACGGGGCTG 
    CGCATTGGCG AGGACTGCGA CTATCTGGGA AGCGTGAAGA AACAGAAGGA 
    GTTTCTCGAC CGTCTGCTGC TACTCCGTGA TGGAGCCCCT CTCGACACGT 
    GCGTGCTAAT GTTCGATTAT TACGGCGACA TGGACATCGA GGACACAGCT 
    CGGGTGAACC TATGGTTCAG GCATGCTCTT ATCCACAAGG CTCGGTTCCT 
    CTGGCTCGAC GTCGGATACT ACCACTCATT TGTGATAGAT GAGATGCCAC 
    TTGTCTCCCA GCACTTGACG AGGCTACAGC TTCGAAATAT AAGGTGAGAT 
    ATCTCGGGTA CGTATCGCTA TCCCGAGTCT TGTTTCTCTG CAGCTGGATG 
    GCTTCCATGA CAGGGCTCCA GTGCTTGAGA GGATGCCATC ATTAGTTGAT 
    GCATTTGTTG GAGTCCTCAA CTGGACTAAA GACTATTGCA TTTGGTCTGA 
    CTCTGGGGAT TGTGGTCATG AGAACTGCGA ATCTTGTTAC GGTATCAAGG 
    ACAACAATTG TGTGCTTTTG GAAGGTTTAT CGGAAGCTAA GACGTTGGGG 
    CTGATAAGTG AACGTGGATC GTCTGGTAAA CAGGCGCCTA GTATCCCTCA 
    TGCAGCTGAT AAAGCCC

    Gene models with high sequence identity

    1. AT3G58940.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 1e-09; Score: 61.20

     

    InterPro Scan Digest

    Program Description E-value
    superfamily F-box domain, Skp2-like 8.8e-11
    HMMPfam F-box domain, cyclin-like 4.6e-06
    ProfileScan F-box domain, cyclin-like 9.471

    See the detailed result >

    AT3G58940.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58930.1); Has 1892 Blast hits to 1858 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1882; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR