K13914

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13914

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13914

Determination of introduced cDNA(s)

  • J023012H21 - Rice Full-length cDNAs - Original: J023012H21

    full reading [+] show sequence

    Nucleotide sequence: J023012H21 - full reading 
    GATTTGGGGG AAATTTCTCC AACGAGAAGC TGTGGGTGAT TAATGGCGTC 
    GCCATGAATC CGATCAACCA TCCAGGAGCA CCATTAATGG CGGCTACGAG 
    GTATTCGTGA GGTGGGCTTG GTGACGATCG ACGAGAGAGT CCGAGGATGT 
    CGTACGCGTC CGGTGGCGGC GGCGGCGGGG AGCTGGCGAC GAAGCGGTCG 
    GCGTTCCACA TCGACTATGG GGGTGGCGTG TCACTGCGGC GGCTGGCGCA 
    GCCGGAGGCC CTGGCGCGCG GGATGATCAC GCAGGGGTCG GCGCAGCTGC 
    GGACGCTGGG GCGGTCGCTG CGGACGGGGG CGGCCATGGC GGTGGTGTTC 
    CAGGAGGACC TGAAGAACAC CTCCCGCAAG ATCTTCGACC CGCAGGACCG 
    GCTGCTGGTG CGCCTGAACC GCAGCTTCGT GGTCTCCTGC ATCGTCTCCA 
    TCGCCGTCGA CCCGGTGTTC TTCTACGCGC CCCAGGTGAC GGCGAACGGC 
    GGCAACCTGT GCGTGGGGAT CAGCCGCGAC CTGGCCATCT CCGCCAGCGT 
    CGTGCGCACC GTCGTGGACC TCTTCTTCGC GGCGCGGATC GTGCTCCAGT 
    TCCGGACCGC TTACATCGCT CCGTCGTCCC GCGTATTCGG CCGCGGCGAG 
    CTCGTCATCG ACACCGCCCA GATCGCCGCC CGGTACTTCC GGCGGTTCTT 
    CGCCGCCGAC CTCCTCTCCG TGCTCCCGCT CCCGCAGATC GTGATCTGGA 
    AGTTCCTCCA CCGGTCCAAG GGCGCCGCCG TGCTGTCCAC CAAGGACGCG 
    CTCCTCATCA TCGTCTTCCT CCAGTACATC CCCCGCGTCG TCCGCATCTA 
    CCCTCTCTCC TCCGAGCTCA AGCGCACCAG CGGCGCCTTC GCCGAGTCCG 
    CCTACGCCGG CGCCGCCTAC TACCTCCTCT GGTACATGCT CGCCAGCCAC 
    ATCGTGGGGG CATCGTGGTA CTTGCTGTCG ATCGAGAGGG TGAGCGATTG 
    CTGGAAGAAG GCGTGCAACG AGTTCCCGGG ATGCAACAAG ATCTACATGT 
    ACTGCGGCAA CGACCACCAA AAAGGGTTCC TCGAGTGGCG AACCATCACG 
    CGGCAGTACA TCAACGAGAC GTGCGAGCCT AGGGACGGCG TCATGCCCTT 
    CAACTACGGC ATCTACACGC CGGCCGTCAG GTCCGACGTC ATCAAGTCCA 
    ACGACTTCAC CTCCAAGCTC CTCTACTGCC TCTGGTGGGG CCTTGCCAAC 
    CTCAGCACGC TGGGGCAAGG GCTGCAGACG AGCATATACA CGGGGGAGGC 
    GCTGTTCTCG ATATTCCTGG CGACGTTCGG GCTGATCCTG ATGGCGATGC 
    TGATCGGCAA CATCCAGACG TACCTGCAGT CGATGACGGT GAGGCTGGAG 
    GAGATGCGGG TGAAGCGGCG CGACTCGGAG CAGTGGATGC ACCACCGCCT 
    CCTCCCCCAG GAGCTCCGGG AGCGCGTCCG CCGCTACGAC GCCTACAAGT 
    GGGTCAACAC CCGGGGCGTC GACGAGGAGG TCCTCGTCGC CAACCTCCCC 
    AAGGACCTCC GCCGCGACAT CAAGCGCCAC CTCTGCCTCG GCCTCGTCCG 
    CCGCGTCCCG CTCTTCGCCA ACATGGACGA GCGCCTCCTC GACGCCATCT 
    GCGAGCGCCT CCGCCCCGCC CTCTACACCG AGCGCACCTT CATCATCCGC 
    GAGGGCGACC CCGTCGACCA GATGCTCTTC ATCATCCGCG GCTGCCTCGA 
    GAGCATCACC ACCGACGGCG GCCGCTCCGG CTTCTTCAAC CGCAGCCTCC 
    TCGAGGAGAG CGACTTCTGC GGCGAGGAGC TCCTCACCTG GGCGCTCGAC 
    CCCAAGGCCG GCCTCTCCCT CCCCTCCTCC ACCCGCACCG TCAGGGCCCT 
    CTCCGAGGTC GAGGCCTTCG CCCTCCACTC CGACGAGCTC AAGTTCGTGG 
    CGGGGCAGTT CCGCCGGATG CACAGCAAGC AGGTGCAGCA CACCTTCCGG 
    TTCTACTCCC AGCAGTGGCG GACGTGGGCG GCCACCTACA TCCAGGCCGC 
    CTGGAGGCGC CACCTCAAGC GGAGGGCGAT CGGCTCGTCG ACGGGGCTCA 
    AGACCACCAT GCTGGTGTCG CGCTTCGCCG CCAACGCCAT GCGCGGCGTC 
    CACCGGCAGC GATCCAGGCG GGCCGACGAG GTCCTCATGA TGCCCATGCC 
    CAAGCCCTCC GAGCCTGATT TCGGCGCCGA TTACTGATCA GCCGGCAAAT 
    GCATGTGAAT TAGCGCTTAT GAAATGGGTG TAAATTGTGA GTAAATGTTG 
    TCGGATTTAG CTGTGCAGTG CAGTACTCCC TCCATTTGAT AGTCATATTT 
    CATCTTGGCA CACAGACTAA GGATAAGTAA TTCTACTTAT CATCTATTTA 
    AATGTGCTAC TAGTCATTCC TCGTAAACAA GTGATTCATT AATATTTACA 
    TTTCTCAATG CCCATGTAGC CAATCATGTG TGGAAGAATG AAGAGTCATG 
    TATTAAATCC AAGAAAGTCA TTAAGATGAT AAGTTGTTGG ATTG

    Gene models with high sequence identity

    1. AT2G23980.1 [+] show detail - cyclic nucleotide-gated channel 6
      E-value: 0; Score: 809.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cyclic nucleotide-binding-like 1.4e-37
    superfamily Voltage-gated potassium channels 1.5e-30
    HMMPfam Ion transport 7.6e-18
    HMMPfam Cyclic nucleotide-binding 7.7e-08
    Gene3D RmlC-like jelly roll fold 3.8e-19
    HMMSmart Cyclic nucleotide-binding 1.3e-13
    ProfileScan Cyclic nucleotide-binding 13.454
    ProfileScan IQ calmodulin-binding region 7.236
    HMMPanther CYCLIC NUCLEOTIDE GATED CHANNEL, PLANT 3.2e-284
    HMMPanther VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL 3.2e-284
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08

    See the detailed result >

    AT2G23980.1

    Model type
    Protein coding
    Short Description
    cyclic nucleotide-gated channel 6
    Curator Summary
    member of Cyclic nucleotide gated channel family
    Computational Description
    cyclic nucleotide-gated channel 6 (CNGC6); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 9 (TAIR:AT4G30560.1); Has 3569 Blast hits to 3382 proteins in 249 species: Archae - 0; Bacteria - 42; Metazoa - 1579; Fungi - 32; Plants - 1028; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR