K13323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13323

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K13323

Determination of introduced cDNA(s)

  • J023145I15 - Rice Full-length cDNAs - Original: J023145I15

    full reading [+] show sequence

    Nucleotide sequence: J023145I15 - full reading 
    GATCCTTGAA GCCAGCCAGC TCGCTCGCTC TAGACTCTAC CTTTTTCGCT 
    TTTTGCTAGA GATCTAGCCA CTTTCTTTGA TCGACATATA TATCCATCGA 
    GATAAAAGGA GATAGTGACA AGTAATTAAC TTAGTTTTTT TCCAATAACG 
    AAATAAAATA GTTTCTACGT CTTTTCCACC TCTGCCAGCA GAGGCGCAGC 
    CAAGTAACTT TTAATTATAG TTATAAATTA ATACACAGAG AATGGGTAGC 
    CAAGAATACA TTAAGCAGGG CGGGCAGCAG CTGGTGGCGG CGATCCTGGG 
    CATCGGCACG GCTGTTCCAC CCTACGTTCT GCCCCAATCC TCCTTCCCCG 
    ACTACTACTT TGACATTTCC AACTCCAATC ACCTCCTTGA CCTCAAGGCC 
    AAGTTTGCAG ATATCTGTGA GAAGACAATG ATCGACAAGC GTCACGTGCA 
    CATGTCGGAC GAGTTCCTGA GGAGCAACCC TTCCGTGGCG GCGTACAACT 
    CCCCCTCTAT CAACGTCCGC CAGAATCTCA CCGATGTCAC TGTGCCCCAG 
    CTGGGCGCTG CCGCCGCCCG GCTCGCCATC GCCGACTGGG GCCGGCCGGC 
    GTGCGAGATC ACCCACCTGG TGATGTGCAC CACCGTCAGC GGATGCATGC 
    CCGGCGCCGA CTTCGAGGTG GTGAAGCTGC TCGGTCTCCC GCTCACCACC 
    AAGCGCTGCA TGATGTACCA CATCGGCTGC CATGGCGGCG GCACCGCGCT 
    GCGCCTCGCC AAGGACCTCG CCGAGAACAA TCCAGGCGGC CGTGTGCTGG 
    TGGTCTGCTC CGAGGTCGTC TCCATGGTGT TCCGCGGGCC TTGTGAATCG 
    CACATGGGCA ACCTGGTAGG GCAGGCGCTG TTCGGGGATG CCGCCGGTGC 
    GGTGGTGGTC GGCGCGGATC CGGTGGAGGC TAACAGTGAG CGCACGCTGT 
    TCGAGATGGT GTCGGCGTGG CAGGACATCA TCCCGGAGAC GGAGGAGATG 
    GTGGTGGCGA AGCTGCGGGA GGAGGGGCTG GTGTACAACC TGCACCGCGA 
    CGTGGCGGCG CGCGTGGCGG CCAGCATGGA GTCGCTGGTG AAGAAGGCGA 
    TGGTGGAGAA GGACTGGAAC GAGGAGGTGT TCTGGCTGGT GCATCCCGGC 
    GGGAGGGACA TCCTGGACCG GGTGGTTCTC ACGCTCGGCC TCCGCGACGA 
    CAAGGTGGCC GTGTGCCGCG AGGTGATGAG GCAGCACGGC AACACGCTGA 
    GCTCCTGCGT CATCATGGCC ATGGAGGAGA TGCGGCGGAG GTCGGCGGAG 
    CGGGGGCTGA GCACGGCCGG CGAGGGCCTC GAGTGGGGGC TGCTCTTCGG 
    CTTCGGGCCA GGCCTCACCG TGGAGACCAT CCTCCTACGC GCGCCACCAT 
    GCAACCAAGC CCAAGCCGTC TGATGTGATT CTCTCATCCA TCCATCCTCC 
    TTCCGTTCGT CCGTCCCTCC AATATTTGGA AAATATATTT TTCTCCTAAA 
    CTATTTATCC GATCACACCG TTATATTCGT TATAATTAAA CTTTTACAAC 
    AAAATATCAT ATGATTATAT TCCAATAAAA TAAAAATATT TGTTTCAAAC 
    CATTAAAACA CAATGTTTCA TGTTTCATAT GTAATAGTTA TATCTTTCAA 
    TGTGTATCAT CATTGTGTTC CTCAAAATTC ACAGAACTAC ATGCCACTAC

    Gene models with high sequence identity

    1. AT5G13930.1 [+] show detail - Chalcone and stilbene synthase family protein
      E-value: 4e-79; Score: 292.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chalcone/stilbene synthase, N-terminal 7.3e-90
    HMMPfam Chalcone/stilbene synthase, C-terminal 9.2e-48
    superfamily Thiolase-like 1.9e-90
    HMMPIR Polyketide synthase, type III 4.6e-191
    Gene3D Thiolase-like, subgroup 5.1e-75
    Gene3D Thiolase-like, subgroup 7.8e-42

    See the detailed result >

    AT5G13930.1

    Model type
    Protein coding
    Short Description
    Chalcone and stilbene synthase family protein
    Curator Summary
    Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
    Computational Description
    TRANSPARENT TESTA 4 (TT4); FUNCTIONS IN: naringenin-chalcone synthase activity; INVOLVED IN: in 11 processes; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Chalcone/stilbene synthase, active site (InterPro:IPR018088), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G34850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR