K13231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13231

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13231

Determination of introduced cDNA(s)

  • J033088A19 - Rice Full-length cDNAs - Original: J033088A19

    full reading [+] show sequence

    Nucleotide sequence: J033088A19 - full reading 
    GAGTCGATCC ACTGCTAACC CCTACCGAGT TAACACTTAA CACCTAGTCA 
    TATCGCAGAT CGAGCTTAGC TAGAATGGCG CGAATGCTTG AGACCGTGTC 
    GGAGATGGAG AACACCGAGG CGGCCGATGG AGATGGAGCT ACAGCTACCT 
    GGAGAAGATC CGGTGCATGT CCACGGGTGG CGGGTCGTCG TCTCGCTCAG 
    TGAGATCCAG TAACTACAGC AGCGCGTCAA GCACCGCGTC CAGTGCGCGT 
    CCTAGGTACG TCCGCTGCTA CGATGATGCT GATTTCGTGA CCTACTCCTT 
    CCAGAGGGCA GTAGGACTTG GAGCCCCCGG ACCTGCTCGA GATATTCGTG 
    GGCAGCTTGG TGAGTGAGTT CAGCCGGGCA TCCGGATCCG GCCCTGCGCT 
    GGACAGGTGG TTCTCAGAAC TGGACGTCAG CTGTGTACTC CGCAATGATC 
    AGGAGGAGGA GGAGGCGACC GGGAGCCTGG TGGGGAGGTG GGCGCGAGCT 
    CTCACTGTGA TGGCGCGCGC GCTGATCGCC ACGCTCCAGG ACCAGGAGGA 
    CAACCTCACC GGCCGACTCT GCCAACTCGG GCGGCTTATG GAGGCGAGTT 
    TCTCCAAGAT CCAACTTGCA CAGTTCGCGC AGGCGACTTT CTCCAAGATG 
    CTTGCCTTTG CCAACGCCCT CGCTGATAAG CCTTGGACGC GGCCAACGGA 
    CAAGTTCTCG GGGCTCATGC AACTCCGCAT CTGCATCAAC GACGTCTCAG 
    ATATCCTCGT CCCGCTGTAC AATGAGGTTT TCTTACTAGC TGATTATTCA 
    AAAGAAATAA TTGAAAGCAT AGTAAAGGAG ATCGATGATG TTTTCTGGGT 
    AGAGCCATAT TGATGATGAC GACGGACGCC TTGAGCCCCC CGAGTGGACC 
    ATTTCCGGAC AATGCAGAAA TCCACAAGGC TACTCTGTTA GCTGTCAACT 
    ATGCAATATT GTTTTGGGGG TACCATAGCG TGCTGGAGGC CATCCTACTT 
    GATAATGGCG ATTTGTTTGG TAATTGCAGT TGGTATTCTG AGAAGCTAGT 
    AGTAGAAAGA TTGATTGTGC AAATTATAAC CAACTTGCAG GATGAGCTCG 
    AGAAGAAATC CAAGTTGTTC TCTGACCATA GCCTGAGATA TCTGTTCTTG 
    CTTAACAATT CCTACGTCGT ACAATATCAG TTTCTTGTAC CCAGCGACTA 
    CAGCCCTCCA TCGGAAATAA AGTTCCACTA TGAGCAGTAC CAAAAAGAGT 
    ATATGCGTGC CTCCTGGGAA CCTGTTCTGT CTTGCCTACA CGATAAGATG 
    CCACCGTGCT TCCCTAAGCT CTCATCGCAT TCGGAGCTGT CAAGATTCGA 
    GTTGGAATTT GAGAAAACAT GCAGTCATCA GAAGCTGTGG AAGGTCCCGC 
    TTCCGAATCT TAGGCAGAGC CTGCGAGAAA CCATCATTAA TAAGATCATT 
    ACTAGATACA AAAAGTACAT GGAGGACCAT CCAGAGCAGG AGAAATGCGG 
    CAGAGATCCA CTGGACATGG AAGGCATGGT GAATGATCTA TTTGAAGGAT 
    GAAGGGGTTG CTACAGTTTC AGAATGACAG GCCCGCACAA ATAGAGTATA 
    AGTTTTAAAG CAGCTACGAA GAGGAGGCCA AGGTTAAATA GGTGTTCTTG 
    ATGTCCTTTT TACTTTTACC GTATTTTGAT GTCGGGTGCA ATTGTGTTCT 
    TATCCCTTGT TTCTTAACTC CAGCGGTGAT TTTACCCCTA CCATTTTAAC 
    TTTGTGATTT TATCACC

    Gene models with high sequence identity

    1. AT5G50380.1 [+] show detail - exocyst subunit exo70 family protein F1
      E-value: 4e-19; Score: 93.60

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Exo70 exocyst complex subunit 3.1e-41
    HMMPanther EXOCYST COMPLEX PROTEIN EXO70 2.2e-15
    HMMPanther Exo70 exocyst complex subunit 2.2e-15

    See the detailed result >

    AT5G50380.1

    Model type
    Protein coding
    Short Description
    exocyst subunit exo70 family protein F1
    Curator Summary
    A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
    Computational Description
    exocyst subunit exo70 family protein F1 (EXO70F1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein D3 (TAIR:AT3G14090.1); Has 952 Blast hits to 944 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 117; Plants - 671; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR