K13018

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13018

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13018

Determination of introduced cDNA(s)

  • J023036E09 - Rice Full-length cDNAs - Original: J023036E09

    full reading [+] show sequence

    Nucleotide sequence: J023036E09 - full reading 
    GGTTTTTTGA CCAAAACTTT GCTGCTCACT GTCCTAGCTG GAGAGAATCC 
    AGCGATACAC GCATGTCTTC TTCTTCAGCT CGGTCTTGGT TGCCGACCTC 
    ATTTGCAGAT TTCTGCACAT GAGGCATCTC TCTCTCGAAG TATCGTGTTT 
    TGATTTGGGC AGGTAGCCAG CCACTGTGAG AGTGTGAGCT GAGGTGAGCA 
    TCGCCATGGG AGAGGTTGCA GAAGACATCT ACACCCAAGA TGGCACCGTG 
    GACGTCAAGG GCAACCCGGC CACCAAGAAG AACACCGGCA ACTGGCGTGC 
    CTGCCCCTAC ATCCTCGCTA ACGAGTGCTG CGAGAGGCTG GCCTACTATG 
    GCATGAGCAC CAACCTCGTG AACTACATGA AGACGCGGCT CGGGCAGGAG 
    AGCGCCATTG CAGCCAACAA TGTCACCAAC TGGTCGGGGA CTTGCTACAT 
    CACCCCCCTT CTCGGTGCCT TCTTGGCTGA TGCCTACATG GGCAGGTTCT 
    GGACCATTGC CAGCTTCATG ATCATCTACA TCCTGGGTTT GGCGTTGCTG 
    ACAATGGCGT CGTCGGTGAA GGGGCTGGTG CCGGCGTGCG ACGGAGGAGC 
    GTGTCACCCG ACGGAGGCGC AGACGGGGGT GGTGTTCTTG GCGCTGTACC 
    TGATAGCGCT GGGCACCGGC GGGATCAAGC CGTGCGTGTC GTCGTTTGGC 
    GCGGACCAGT TCGACGAGAA CGACGAGGGG GAGAAGCGGA GCAAGAGCAG 
    CTTCTTCAAC TGGTTCTACT TCTCCATCAA CATCGGCGCG CTGGTGGCGT 
    CGTCGGTGCT GGTGTACGTG CAGACGCACG TCGGGTGGGG GTGGGGGTTC 
    GGCATCCCGG CCGTCGTCAT GGCCGTCGCC GTCGCCAGCT TCTTCGTCGG 
    CACGCCGCTG TACAGGCACC AGCGGCCCGG GGGCAGCCCG CTGACGAGGA 
    TCGCGCAGGT GCTCGTCGCG TCGGCGAGGA AGTGGGGCGT CGAGGTCCCC 
    GCCGACGGGT CGCGGCTGCA CGAGACGCTC GACAGGGAGT CCGGCATCGA 
    GGGCAGCCGC AAGCTGGAGC ACACCGGGCA GTTCGCGTGC CTCGACAGGG 
    CGGCGGTGGA GACGCCGGAG GACAGGTCGG CGGCGAACGC GTCGGCGTGG 
    CGGCTGTGCA CGGTGACGCA GGTGGAGGAG CTGAAGAGCG TGGTGCGGCT 
    GCTGCCGATC TGGGCGAGCG GGATCGTGTT CGCGACGGTG TACGGGCAGA 
    TGAGCACCAT GTTCGTCCTC CAGGGGAACA CGCTCGACGC CAGCATGGGG 
    CCGCACTTCT CCATCCCGGC GGCGTCGCTC TCCATCTTCG ACACCCTCAG 
    CGTCATCGTC TGGGTGCCGG TGTACGACCG CCTCATCGTG CCGGCGGTGC 
    GCGCCGTGAC GGGGCGCCCA CGCGGGTTCA CCCAGCTGCA GCGGATGGGC 
    ATCGGCCTCG TCATCTCCGT CTTCTCCATG CTCGCCGCCG GCGTGCTCGA 
    CGTCGTCAGG CTGCGCGCCA TCGCTCGCCA CGGGCTCTAC GGCGACAAGG 
    ACGTCGTGCC CATCTCCATC TTCTGGCAGG TGCCGCAGTA CTTCATCATC 
    GGCGCCGCCG AGGTGTTCAC GTTCGTCGGG CAGCTGGAGT TCTTCTACGA 
    CCAGGCTCCC GACGCCATGC GCAGCATGTG CTCGGCGCTG TCGCTCACCA 
    CCGTCGCGCT AGGCAACTAC CTCAGCACGC TGCTCGTGAC CATCGTTACC 
    CATGTCACCA CCCGGAACGG CGCCGTCGGG TGGATCCCGG ACAACCTCAA 
    CCGCGGCCAC CTCGACTACT TCTTCTGGCT GCTCGCCGTG CTCAGCCTCA 
    TCAACTTCGG CGTCTACCTC GTCATCGCCA GCTGGTACAC CTACAAGAAG 
    ACGGCGGATT CACCGGACGA CAAGGCCGAG CACGCCGGAG CAAACTGTGC 
    CACGAGGTGA AGCTGATTAT GACATACAAG GGGGAATTGA ACTGAATTGT 
    GGCGTGTGAA TGTCAGAATG TGTGGGGTTC TAAACAAGTT CTTGGGAGAT 
    AAAATGGAAA GGAAATTAGT GTCGTTTGTG ACCTTCAAAT ATGTTATAGT 
    GTTCATTGCA TTATGTCTGG TAGGAAAAAA TGAAGAAGAA TAGGAGGATA 
    TAGTAGTTTA AAAATATAAA TGTGATGTTT AGTTTTCTAG AAATGCATTG 
    GCCAAAGTTG TTCAAGAAAT AAGGTCTTCT GTGGTGGAGT ATCTCATAAG 
    TTCATTAGGT TGCAGAAATG CCATTGTTCA GCAGTCAGAA AGACAGCGAT 
    TTATGGG

    Gene models with high sequence identity

    1. AT5G01180.1 [+] show detail - peptide transporter 5
      E-value: 0; Score: 766.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oligopeptide transporter 1.6e-108
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0
    superfamily Major facilitator superfamily, general substrate transporter 4.3e-32

    See the detailed result >

    AT5G01180.1

    Model type
    Protein coding
    Short Description
    peptide transporter 5
    Curator Summary
    Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.
    Computational Description
    peptide transporter 5 (PTR5); CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 1 (TAIR:AT3G54140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR