K10832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10832

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10832

Determination of introduced cDNA(s)

  • J023069E21 - Rice Full-length cDNAs - Original: J023069E21

    full reading [+] show sequence

    Nucleotide sequence: J023069E21 - full reading 
    GATATATCAT CATCACCATC TTTATCTCCC TCTCTCTCTC TCCCTCTCTG 
    CATATATATA GCTACTTCGA TCTCTTTGTA GCAACCATCA GTTAGCTAGC 
    TAGCTTGAGG TAGCTAGCGC TTGTATTTAT CAGAAGCTTA GAGATAATTT 
    TCAGAAGCTT AGAGAGCTAT CTTAGCTACA AGGAATTACC GGCCAATCGA 
    CGGCGAGATC GATCGATTGA TCATGGGAGG GTTTGAGAGG AGAGGAGTTC 
    GGCAGTACAA CCGGTCCGAG GTGCCACGGA TGCGGTGGAC GGAGGAGATG 
    CACCGGCAGT TCGTCGAGGC CGTCGAGTGC CTCGGCGGCC AGGACGAAGC 
    AACACCGAAG CGAATTCTTC AGTTGATGGG CGTGAAGGGA GTTAGCATCT 
    CTCATATCAA GAGCCATCTT CAGATGTACA GATCAGGCTC TAGCAACAGC 
    AATCATCCTG TCAGCCTCCA GAAGTTGACA TCAGCTACTG TTAACAACAT 
    TAGCAAACGT GAGTTTGTGA ATAGTGAAGA TCGCTGCATT TACGCGTCAG 
    GGGATAGAAA CACTGCATCT TCAGACAAGA ATACTTACAC CATACTCCGC 
    TGCGGCCGCT CATCAATGCC ATCAATAGAA GAAATATTCA GAAACTGGGA 
    ACAAACCAGA GGGCGTCTTC TTCCATGGAA CTCCAACGTG ATTACAACAG 
    AACAGGCAAC GACTAGAGCA AGTCGTCAGA CTACTAACTA CAGTAAGCCT 
    CTGAAGCAGC TGACAGACTG CGACCTGACG CTGTCGATCG GGCAGCTGTG 
    GGACGACGCC GCCGGCAGCG ACGCCGACGG CTCCAGCACG ATCAGCGAGG 
    AGGTCGCCGC GCCGTCGAGG GACGAAGCGT TCGTCTCTTC GGCCGATGAC 
    CACTTCGCCG CCGCCGCCGC GAAGAAGGAG AGCAATGCTG ACCACTGATC 
    TGAACCTGGA CCTGACCATT TCATCTTCTT GGCTGTCCTG ATCATATGAT 
    CATTCAGTTG ATGGGCCTGT GTATAGCTGC ATTATATTTG TGCATATATG 
    TAGTAGTATG TGTACAAAAA TAACGCGGAG AGAGAGAGCG TCAGGCTAGT 
    AGTATTTGCA GGTTACCTGA TGAGATGATC TTAGAGAGTG TAGTAATATT 
    CTGGAGATTT CTTTAGGATT ATTTTCTTAT GGTCAGACAC AGCATTTTAT 
    TAGGTTTTTC AGTAGCGCAT GCACGCGTTT ATCTGTATAG TTTTCTTTCT 
    ATTATTAATT GTTCGTTCGA TCAGAGACCG GGGACTTCAT ACGAAGACGG 
    GTGAGAAATT TTGACAGTTT TTGCTTCTCT TGGGTAGACT TCTCTGTTGA 
    ATTTCTCACC TTTCATCATC TGGGCAGTTC CCCTATTTCT GATCGAATTG 
    TTTGCGCACC

    Gene models with high sequence identity

    1. AT2G02060.1 [+] show detail - Homeodomain-like superfamily protein
      E-value: 2e-21; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 11.373
    Gene3D Homeodomain-related 2.9e-19
    superfamily Homeodomain-like 2.6e-17
    HMMPfam Myb, DNA-binding 4.5e-11
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 4e-26

    See the detailed result >

    AT2G02060.1

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Computational Description
    Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G14600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR