K09843

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09843

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09843

Determination of introduced cDNA(s)

  • J013148O09 - Rice Full-length cDNAs - Original: J013148O09

    full reading [+] show sequence

    Nucleotide sequence: J013148O09 - full reading 
    GCTTTTTCGT TGGAGAGGCG GCGGCGCGAA AAATCCGAAG CTTTCGCGGG 
    AGGAGCTAGG GTTTGTGTGT GTGGTTGGGC GCGCGGCGAG CGGCGGGAGA 
    TGTCGGCGTA CGACGAGGTG GAGATCGAGG ACATGGAGTG GAACGCGGAG 
    CTCGGGGCGT ACACGTACCC GTGCCCCTGC GGCGACCTGT TCCAGATCAC 
    GCTCGCCGAC CTCCGCCTCG GGGAGGAGAT CGCGCGGTGC CCCTCCTGCT 
    CCCTCTTCCT CACCGTCGTC TACAACGAGG AGGACTTCGC CGACGCCAAG 
    GAGCCCCCGC ACAAGCCGGC CCCGCGCCCC GTCGCCGTCG CCTGAGGCGC 
    AGGATGGAAT CAGGCTTAAC TAAAATGAGA AAACAAACGG GAGCATTTGT 
    ACTTCTAAGA TGAGAAAGTA GTTATATCGA CCTTTGGCTT TTGAATTCAC 
    TATGTACGGA GTTACCAAAA AAAAAAAACC ACAACGTGTT GACGGGGCAT 
    TATGAATAAC TATTGCTTGG AGATTTTGCT GTTGC

    Gene models with high sequence identity

    1. AT2G15910.2 [+] show detail - CSL zinc finger domain-containing protein
      E-value: 5e-26; Score: 114.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, DPH-type 3.7e-22
    ProfileScan Zinc finger, DPH-type 21.642
    HMMPanther SUBFAMILY NOT NAMED 1.1e-38
    HMMPanther FAMILY NOT NAMED 1.1e-38

    See the detailed result >

    AT2G15910.2

    Model type
    Protein coding
    Short Description
    CSL zinc finger domain-containing protein
    Computational Description
    CSL zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, DPH-type (InterPro:IPR007872).
    Link
    InterPro Scan - TAIR