K09731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09731

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09731

Determination of introduced cDNA(s)

J023132F05 - Rice Full-length cDNAs - Original: J023132F05

full reading [+] show sequence

GGGGCGTCCA GATCTCGGGC TCGCTGAGCT GTCGCCATCG ACCCGGAGTC 
CCTCCCGCAC CAGCTAACCT TTGCTTCCGT TGGAAGCGCC AGCCAGCGCT 
CGCCGTTGTC ACCTGTCACA CTGCGTTGCA CGGATTATCG TTTTTAATTA 
ATCGTCACCA GATTGTTTTT TTTCTTTCTT TTTGCAAATC TCGCTTCGCT 
TTTGGAGTGG GAGGAATTAA TTGTGGAGTT GGGTAGATCG ATCAGGGGCA 
GCGCGAGCGA GGCCCGGTTG GTAGCAGTCG GTGCGTGTTT GTGCGTGTGC 
GCGCTGCTTC TGCTTGCATC GTGGTGCGAG GAGGGGAGAG GAGGGGTGCT 
GCTATAAATA CGGCTCAGAT CTGGGAGGCT TTCTTCCTCG TCCGCCTCCG 
GTCTAATCCG ATTCAAACCC GCCGTTTCCA AGCTTGCTCT CCTCTCCCCC 
CCAATCCTTC CCTCCCGAGT GGCAGGGTGC TCGACGGGAT GGCGCAGAAG 
GAGGCCAATG GCAGCAGCAA CGGGGAGCAC ACCACCCGCC CGCCGCCGAC 
GCCCTCGCCG CTCCGGTTCT CCAAGTTCTT CCAGGCGAAC CTGAGGATCC 
TCGTCACCGG CGGAGCTGGC TTCATCGGCT CGCACCTCGT CGACAAGCTC 
ATGGAGAACG AGAAGCACGA GGTCATTGTC GCAGACAACT TTTTCACTGG 
TTCAAAAGAC AACCTGAAGA AGTGGATCGG ACACCCAAGA TTTGAGCTAA 
TCCGTCATGA TGTCACCCAG CCCCTGCTTG TGGAGGTTGA CCAAATCTAT 
CACCTTGCTT GCCCTGCTTC ACCAATCTTC TACAAGCACA ACCCTGTCAA 
GACCATCAAG ACAAACGTTA TCGGAACCCT GAACATGCTT GGACTTGCCA 
AGAGAGTTGG AGCTAGGATT TTGTTGACTT CGACCTCTGA AGTTTACGGT 
GATCCGCTTG AGCACCCTCA AACAGAGGCC TACTGGGGAA ATGTTAACCC 
AATTGGAGTC AGGAGTTGCT ATGACGAGGG TAAGCGTGTC GCAGAAACAC 
TGATGTTTGA CTATCACAGG CAGCATGGCA TTGAGATCCG AATTGCCAGG 
ATTTTCAACA CCTATGGACC TAGGATGAAC ATTGATGATG GGCGTGTTGT 
TAGTAACTTC ATTGCTCAGG CCGTACGTGG CGAGCCCCTG ACTGTTCAGA 
AGCCAGGAAC ACAAACTAGG AGCTTCTGCT ATGTTGCTGA CATGGTTAAT 
GGTCTTATTA AGCTGATGAA CGGGGACAAC ACTGGACCAA TTAATTTGGG 
AAACCCAGGT GAATTCACCA TGCTGGAACT TGCTGAGAAT GTGAAGGAGT 
TGATCAACCC AGAGGTTACC GTCACAATGA CTGAGAACAC TCCTGATGAT 
CCTCGTCAGA GGAAGCCAGA CATTACAAAG GCAAAGGAAG TTTTGGGGTG 
GGAGCCCAAG ATCGTTCTGC GTGATGGCTT GGTGCTCATG GAAGATGATT 
TCCGGGAGCG CCTCCAAGTG CCCAAGAAGA ACCAGGCCTA AGCTGCTGCA 
TCGCATTTGG CGAAAGATGT CACTGGAGCA TACTTAATAG TTGGGTTTCA 
CCATTATTTG TGTCGCAGTT CATTGTGGAA TTTGGGTTCC AATAAATTCT 
GATACACCTT TGTTGTTCAC CTGAAATATT GTGTTACTAG AATCGTCATA 
CGGGGCTGGG CTATTTGTAT CATTACCGCT TTTGGAGAAC TCTTTATACT 
TTTGTTTGTA GCCTGTGTAC TCGCCTAAAT CAATTATAGC AATGTTGATG 
AATTTTTAGC T

Gene models with high sequence identity

AT2G28760.3 [+] show detail - UDP-XYL synthase 6
E-value: 1e-171; Score: 600.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	DTDP-GLUCOSE 4-6-DEHYDRATASE	6.7e-170
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	6.7e-170
superfamily	NAD(P)-binding domain	4.9e-93
Gene3D	NAD(P)-binding domain	2.5e-63
HMMPfam	NAD-dependent epimerase/dehydratase	1.4e-45

See the detailed result >

AT2G28760.3

Model type: Protein coding
Short Description: UDP-XYL synthase 6
Computational Description: UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 45408 Blast hits to 45356 proteins in 3037 species: Archae - 861; Bacteria - 26677; Metazoa - 782; Fungi - 385; Plants - 1435; Viruses - 88; Other Eukaryotes - 15180 (source: NCBI BLink).
Link: InterPro Scan - TAIR