K09721

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09721

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09721

Determination of introduced cDNA(s)

  • J033024M04 - Rice Full-length cDNAs - Original: J033024M04

    full reading [+] show sequence

    Nucleotide sequence: J033024M04 - full reading 
    GAGCCGCCGC CGCCGCAGCC TCCTCCTCTC GTCTTCTCCT TCGAGGTCAG 
    CTTCAGATCT TCTCTCTTCT CCATATTTGC GCTTGTTCAT GTTCGTTCGT 
    AGCTGCAGAT CTGGTTTAGT AACGTGAGGT TTCGGTGATT TCGAGCTGGG 
    GCATGTTGTG TTCGCCCATT TTTTGTAACT TTTTTCTGTG TATTCATCTC 
    ACTGCAATGA TCTTCGTCTG CTGTTCGTTG ACGCGACGAT AAACTTGATT 
    TGTCAGTGAA TCATCTGCAT AGGTTGAAAA TTATCGGCAG AATCGGACGA 
    TGAACTTGAT TTGGTGCAGA ATCATTTACA TAAGTTGAAA ATTATCGGTG 
    GAATCACTAG AAGGATTTTT ATCTACAATC CGTTCGCATA GATCTCTTTC 
    CGTGTTTCTG TAATTTTTTT TATTCTACTA CTGCTGAGTA GGTGTTATCG 
    TCTGTACCCG GTTTGGTTGG GTCGATTACT GCGCCTCTGT GCAAATCATC 
    CGCCGATTAG CTGCGTTAGC ACTTTTATAG CTGCCCAAGT TTGATCTGTG 
    AGCTTGCCTG CTATATTTAT TTAGAGTTGT AAATTATACA CTTATCTTTG 
    TTTCTAATAT TTGTTTCGTT CTGTGCTGCA GTTGTTAGCT CCCTCCTTAT 
    TCAACCATGG GTAAGGAGAA GACGCACATC AACATTGTGG TCATTGGCCA 
    CGTCGACTCC GGCAAGTCGA CCACCACGGG CCATCTGATC TACAAGCTTG 
    GAGGTATCGA CAAGCGTGTG ATCGAGAGGT TCGAGAAGGA AGCCGCTGAG 
    ATGAACAAGA GGTCCTTCAA GTACGCGTGG GTGCTCGACA AGCTCAAGGC 
    CGAGCGTGAG AGAGGTATCA CCATTGATAT CGCCCTGTGG AAGTTCGAGA 
    CCACCAAGTA CTACTGCACG GTCATCGATG CCCCTGGTCA CCGTGACTTC 
    ATCAAGAACA TGATCACGGG TACCTCCCAG GCTGACTGTG CCGTGCTCAT 
    CATTGACTCC ACCACTGGTG GTTTTGAGGC TGGTATCTCC AAGGATGGCC 
    AGACCCGTGA GCACGCTCTT CTTGCTTTCA CTCTTGGAGT GAAGCAGATG 
    ATCTGCTGCT GCAACAAGAT GGATGCCACC ACTCCCAAGT ACTCCAAGGC 
    CCGTTATGAT GAAATCGTGA AGGAAGTCTC ATCCTACCTG AAGAAGGTCG 
    GCTACAACCC TGACAAGATT CCCTTTGTTC CCATCTCTGG GTTTGAGGGT 
    GACAACATGA TTGAGAGGTC CACCAACCTT GACTGGTACA AGGGCCCCAC 
    CTTGCTTGAG GCTCTTGACC AGATCAACGA GCCCAAGAGG CCATCAGACA 
    AGCCCCTACG TCTTCCCCTT CAGGACGTGT ACAAGATCGG CGGTATTGGT 
    ACCGTGCCTG TGGGTCGTGT TGAGACTGGT GTCCTCAAGC CTGGTATGGT 
    GGTGACCTTT GGTCCCAGCG GTCTGACCAC TGAGGTCAAG TCGGTTGAGA 
    TGCACCACGA GGCTCTCCAG GAGGCTCTTC CTGGTGACAA CGTTGGGTTC 
    AACGTGAAGA ACGTTGCCGT GAAGGATCTG AAGCGTGGGT ACGTGGCCTC 
    TAACTCCAAG GATGACCCTG CCAAGGAGGC TGCCAGCTTC ACCTCCCAGG 
    TGATCATCAT GAACCACCCT GGGCAGATCG GCAATGGCTA CGCCCCAGTG 
    CTGGACTGCC ACACCTCACA CATTGCCGTC AAGTTTGCTG AGCTGGTGAC 
    CAAGATCGAC AGACGATCCG GCAAGGAGCT GGAGAAGGAG CCCAAGTTCC 
    TCAAGAACGG TGATGCTGGT ATGGTTAAGA TGATTCCCAC CAAGCCCATG 
    GTTGTGGAGA CCTTCTCTGA GTACCCTCCT CTTGGTCGTT TTGCCGTGCG 
    TGACATGAGG CAAACGGTGG CTGTTGGCGT CATCAAGAAC GTGGAGAAGA 
    AGGACCCAAC CGGTGCCAAG GTGACCAAGG CTGCCGCCAA GAAGAAATGA 
    GCATCGTTGA AGTGGTGGTT ATGCTGGCTG CATTTGAGAT ATCTTAGCGT 
    TCGTTAAGTT TTGCCCACAG CCATGGCACT CGTTGCATGG ACCGTTAATA 
    TCTGCTCGCA ATGTGCACTA TGTTAGTCGT TTAAAACTCG TTTATTTCTA 
    TTCGGTT

    Gene models with high sequence identity

    1. AT5G60390.3 [+] show detail - GTP binding Elongation factor Tu family protein
      E-value: 0; Score: 856.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein synthesis factor, GTP-binding 5.8e-56
    HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 6.8e-33
    HMMPfam Translation elongation factor EFTu/EF1A, domain 2 2.4e-17
    HMMPanther ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) 0
    HMMPanther TRANSLATION FACTOR 0
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    BlastProDom Q46515_DESMO_Q46515; 8e-07
    superfamily P-loop containing nucleoside triphosphate hyd 5.6e-84
    superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 2.5e-41
    superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 4.6e-33
    PatternScan Protein synthesis factor, GTP-binding 0
    HMMTigr Translation elongation factor EF1A, eukaryotic/archaeal 2.1e-293
    Gene3D no description 2.4e-58
    Gene3D no description 3.6e-31
    Gene3D no description 1.2e-45

    See the detailed result >

    AT5G60390.3

    Model type
    Protein coding
    Short Description
    GTP binding Elongation factor Tu family protein
    Computational Description
    GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, cytoplasm; EXPRESSED IN: cotyledon, male gametophyte, guard cell, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT1G07940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR