K09628

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09628

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09628

Determination of introduced cDNA(s)

  • J023140D21 - Rice Full-length cDNAs - Original: J023140D21

    full reading [+] show sequence

    Nucleotide sequence: J023140D21 - full reading 
    GGGTGGTTTT GGTAGTGGCT GGGAGTACAT TTGATTTGAG CCATGGACGA 
    CAACGGCGAC GTCCATTTCT GCCACAGAGC CACCGCCGTC GTGGCGCTGC 
    TTCTTCTCCA CCTTGTCGTC GTCGCCAACG CCGCCGCCCA CTCCTGCGAT 
    TGGTGCACCC CGCGCCACTC CACCGTCTCC ATCCTCCCCA CCCCCACGCA 
    CGCCGCCCAT CTCACCGGTG GCGCCTGCGG GTTCGGTGCC GCACCAATGG 
    AGCTCAACGT TGCCGCCGTC ACCGCCGACC TCTTCCGCCA TGGCCATGCC 
    TGCGGCGCCT GCTACCAGTT AAGGTGCAGA GACCGGAGAC TGTGCGGGGA 
    GGACGGCGTC GAGGTCGTCG TCGCCGACAT GGCGAAGCAG CCGGAGCAGG 
    AGGGGGAGAT GAACCGGACA GCCGGCGGCT CGCTGCAGTT TCGCATCACC 
    GAGGACGCCT TCGCGGCCAT GGCCAAGCAG GGCGTCTCCG CTCACGAGCT 
    CACGAGGCAG CGCACGCTAG AGGTGGACTT CAGGAGGATA CCTTGCGAGT 
    ACAGGGAGAG CAGGAGGTTG GCGGTGAGGG TGGAGGAGGC GAGCAGGAAC 
    CCGACCCACC TCGCCATCCG CTTCCTGTAC CAGGGCGGCC AGACCGACAT 
    CGCCGCCGTT GAGATCGCGC AGGCGAACGC TACACCGCCG TCGTCGTCGT 
    ACTATTCGTC GTGGAGGTAC ATGACGCGGC GCGACGGCGC GCCGGGAGTC 
    TGGACGACGT CGCGCGCGCC GGTCGGCCCG CTGCGGCTCC GCGTCGTGGT 
    GACGGCCGGC TCCGGCGGGA AATGGCTGCG TAGCGACGGT GAGGTGCTTC 
    CCGCCGACTG GAGGCCCGGC GAGGTGTACG ACACCGGCCT TCGGGTCACC 
    GACGTCGCCG TGCGCTCGTG CAGCCTCTCC TGTGCCATCC AGGACATGGA 
    CAGCGATGAT GACAGGAGGA AGAGCTCAGA TGACAATTCG ATCGACGTGA 
    TGAAGAAGAA GGCGTCCTTA TGCAGAGGCG TGGAGGATGG GATTAGTCGG 
    CGGCGGCGGC GGCGAGAGGC TTGGTACGCC ACTGCACCGG CGACGCGGAT 
    GGGAGGCGGC AGAGAAGGAG GGAGTCAATA CGCTTTGGAA GTTACAAAGC 
    CAGGGGCTTT TATGTAAAAG TGAGAAACTG ATAACCTCTC ATCGCGGACC 
    TGTGAAAAAA TGTAGCCACC CATCGGTAGC GCAGCAAACT TGGACCTTCT 
    TGGAAAGGCA AATTTTGCCA TTCGACATGG CCACTTCGCG

    Gene models with high sequence identity

    1. AT4G38400.1 [+] show detail - expansin-like A2
      E-value: 3e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pollen allergen, N-terminal 9.3e-17
    Gene3D Pollen allergen/expansin, C-terminal 2.7e-09
    HMMPfam Pollen allergen/expansin, C-terminal 3.6e-12
    HMMPfam Rare lipoprotein A 1.6e-06
    superfamily Barwin-related endoglucanase 3.8e-26
    superfamily Pollen allergen/expansin, C-terminal 7e-18
    ProfileScan Expansin 45, endoglucanase-like 21.651
    ProfileScan Pollen allergen/expansin, C-terminal 14.395

    See the detailed result >

    AT4G38400.1

    Model type
    Protein coding
    Short Description
    expansin-like A2
    Curator Summary
    member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin-like A2 (EXLA2); INVOLVED IN: response to cyclopentenone, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin-like A1 (TAIR:AT3G45970.1); Has 1877 Blast hits to 1874 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1869; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR