K08613

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08613

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08613

Determination of introduced cDNA(s)

  • J033075E02 - Rice Full-length cDNAs - Original: J033075E02

    full reading [+] show sequence

    Nucleotide sequence: J033075E02 - full reading 
    GGCCCGAGCC ATTTCTCCGC GACCTCTTCT TCTCCCTCGC TTGGCACGAT 
    CAGAAGCGGC CGGAGGAGAG GCAGATAGAT AAACAGTGCC AGCCATGTCG 
    CCTCCTCTGT GACTTAAATT GGACTGAATT GATCAGGTGG CTGCGCCTCA 
    CCTGAAGCCA ACAAAGTAAG CAGCGAGAGG ACGCGCCGCC AGGGTAGGGA 
    GAGCAAGCTA TATATCTAGC TGTGCTGTGC TGTAGTGATC GATCTCTCCC 
    TGTTGTTTTG CGGGGATGGC GGCCGCCTCG TCCGCACCCT TCTTTGGGCT 
    CGGCGACACG CAGATGCCGC CGCCGCAGAA TCCCACCAAT CCAGCCCTCC 
    ACCACCACCC CAACCCCTCC CCCGCTCCCG TCGCCGCCGC CGCGCCCGCG 
    CCGAAGAAGA AGAGGAACCA GCCTGGAAAC CCAAATCCAG ATGCGGAGGT 
    GATAGCGCTG TCGCCGCGGA CGCTGATGGC GACCAACAGG TTCGTGTGCG 
    AGGTGTGCAA CAAGGGGTTC CAGCGGGAGC AGAACCTGCA GCTGCACCGG 
    CGAGGGCACA ACCTGCCGTG GAAGCTGAAG CAGAAGAACC CCAAGGAGGC 
    TCGCCGGCGC GTGTACCTGT GCCCGGAGCC GTCGTGCGTC CACCACGACC 
    CGTCGCGGGC CCTCGGCGAC CTCACCGGGA TCAAGAAGCA CTACTGCCGC 
    AAGCACGGCG AGAAGAAGTG GCGCTGCGAC AAGTGCTCCG AGCGCTACGC 
    CGTGCAGTCC GACTGGAAGG CCCACTCCAA GACCTGCGGC ACCCGCGAGT 
    ACCGCTGCGA CTGCGGCACC CTCTTCTCCA GGAGGGACAG CTTCATCACC 
    CACCGCGCCT TCTGCGACGC GCTGGCGCAG GAGAACGCGC GCATGCCGCC 
    CATCGGCGCC GGCGTATACG GCGGCGCCGG CAACATGACA CTTGGGCTCA 
    CCGGCATGGC CGCCCCGCAA CTTCCCGCCG GCTTCCCTGA TCAGGCCGGC 
    CAGCCGTCGG CGTCGGCCGG CGATGTCCTC CGCCTCGGCG GCGGCAGCAA 
    TGGCGCCTCT CAGTTTGATC ACCTCATGGC CTCGTCGTCG GGCTCCTCCA 
    TGTTCCGCTC GCAGGGATCG TCGTCCTCCT CGTTCTACCT CGCCAATGGC 
    GCCGCCCATC ATGCTCCCGC TCAGGACTTC GGCCCGGAGG ACGGCCAGTC 
    TCAGGCCGGC CAGGGCTCGC TGCTCCACGG CAAGCCGGCG GCGTTCCATG 
    ACCTGATGCA GCTCCCCGTG CAGCACCAGC AAAGCGGCAA TGGTAACCTC 
    CTCAACCTTG GCTTCTTCTC CGGCAGCAAT GGCGGCGTCG ACCAGTTCAA 
    CGGCGGCGCT GGAAACGGCG GGCAGGGCAG CATCGTTACT TCTAGCGGCC 
    TCGCCGGCAA CCACGGCGGC GGCGGCGGCG GCTTCCCTTC TCTGTACAAC 
    TCGTCCGAAC CGGCCGGTAC ACTGCCGCAG ATGTCGGCGA CGGCGCTCTT 
    GCAGAAGGCT GCCCAGATGG GTGCAACGAC GAGCAGCTAC AACGCCGGCG 
    GCGCCGGTGG CGCGAGCTCG CTGCTCCGTG GAGCTAGCTC CCACGGGATC 
    AGCGTCGGTG AAGGGCCGGC CAACGAGAGG TCGTCGTACC AGAATCTCAT 
    CATGGGCTCC ATGGCGAGCG GCGGCGGTGG CGCGGGTTTC GCCGGTAGCT 
    TCTCCGGCGC GTCTGGATTC GGTGGCGCCG TCGACGACGG CAAGCTGAGC 
    ACGAGGGACT TCCTCGGCGT CGGCGTCGTC CAGGGCATCA GCGGCTCGGC 
    GGCAATGGGG CCGCCGCGCC ATGGCGCGGC CGGCCTCCAC GTCGGCTCAC 
    TGGACCCGGC AAACATGAAC TGAAGTCATC ACAGAGAAGA AAAAAAACAA 
    TAGAAGACGG AAGGAGATGA TCATGCTGCT AATTTCATTT CATCATATCA 
    GAATTAGTCA AGAAACTGGA GGTAATTAAT TAAGAAGAGA AAAGCGATTT 
    CAATCCATGC AAGATGGATG TTTCTGGGGA AATCTGGAGC TGTTAATGGT 
    GAGTCGTAGT TGCTAGCTAG CTAGCCAGAG CTGGGAGGAA TAATAATAAT 
    ACCTGGATTA AGTGGCCAGA ACTTAATTTT GTACCGGTAC ATTTCGTTTG 
    TTTTTCATGT ACTTTTGGCA GGGAAATGGG TCTCTTTTGA TGTGAAGTCA 
    TCATGTGAAG GCCTGACCCC AGACTAGAAT CAATTCAAGC GCGCGCTGTG 
    CCTGGATTAA TT

    Gene models with high sequence identity

    1. AT2G02070.1 [+] show detail - indeterminate(ID)-domain 5
      E-value: 1e-99; Score: 361.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, C2H2-type 11.094
    HMMPfam zf-C2H2_jaz 4.1e-05
    HMMPanther UNCHARACTERIZED 4.8e-10
    HMMPanther SERINE/THREONINE-PROTEIN KINASE RIO 4.8e-10
    PatternScan Zinc finger, C2H2-type 0
    HMMSmart Zinc finger, C2H2-like 0.0041
    HMMSmart Zinc finger, C2H2-like 220
    superfamily C2H2 and C2HC zinc fingers 3.5e-05
    superfamily C2H2 and C2HC zinc fingers 0.00028

    See the detailed result >

    AT2G02070.1

    Model type
    Protein coding
    Short Description
    indeterminate(ID)-domain 5
    Computational Description
    indeterminate(ID)-domain 5 (IDD5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1); Has 61158 Blast hits to 25844 proteins in 587 species: Archae - 8; Bacteria - 480; Metazoa - 52168; Fungi - 1154; Plants - 982; Viruses - 10; Other Eukaryotes - 6356 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR