K07939

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07939

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07939

Determination of introduced cDNA(s)

J013129P04 - Rice Full-length cDNAs - Original: J013129P04

full reading [+] show sequence

GCTTAGCTTA ATCGGCCTCG TTCCTCTTGC TGAGCGACTC AGCTTCCTCA 
CCGAGCAGAT TGCATTTTAC ACCGGTCCTA CTGTGGGAGG ACTACTGAAC 
GCGACATTTG GGAACGTGAC GGAGGTGATA ATCGCGCTGT TGGCGCTGCG 
AGAAGGAAAG ATTGAGGTGG TGAAATGCTC CCTGCTGGGA TCCATCCTCT 
CCAACCTGCT GCTTGTCCTC GGCACCTCCC TCTTCCTCGC CGGCATCGCC 
AACCTCCGCG CCCACCAGCC GTACGACACC AAGCAAGCTC ACGTCAACAC 
CGCCCTCCTC ATGCTCGCCG TCCTCTGCCA CTCCCTGCCG CTCATGCTCA 
GGTACGCCGT CACCTCCGGC GACCACGCCA TCGTCTCCGG CGACGCCGTC 
CTCCTCGCCA TCGCCGCCAC TTACCTCCAC TTCGGACAGG TGTGGGTGTT 
TGTGCTTAGC TTAATCGGCC TCGTTCCTCT TGCTGAGCGA CTCAGCTTCC 
TCACCGAGCA GATTGCATTT TACACCGGTC CTACTGTGGG AGGACTACTG 
AACGCGACAT TTGGGAACGT GACGGAGGTG ATAATCGCGC TGTTGGCGCT 
GCGAGAAGGA AAGATTGAGG TGGTGAAATG CTCCCTGCTG GGATCCATCC 
TCTCCAACCT GCTGCTTGTC CTCGGCACCT CCCTCTTCCT CGCCGGCATC 
GCCAACCTCC GCGCCCACCA GCCGTACGAC ACCAAGCAAG CTCACGTCAA 
CACCGCCCTC CTCATGCTCG CCGTCCTCTG CCACTCCCTG CAGCATCCTC 
ATGCTCATCG CCTACCTGGC CTACCTCTTC TTCCAACTCA ACACGCATCG 
CCAGCTGTTT GAGCCCCAAC AGGTTGAGGA TGATGACGAC GATGATTTAG 
TGATCGCTCA AGATGATGAG CCAGTACTGG GATTCTCGAG TGCCATGATT 
TGGCTGGCTC TCATGACTCT CCTGACTGCG CTCTTGTCAG GGTATGTTGT 
GAGCACAATT GAGGCGGCCT CAGAATCATG GGAACTATCA GTGAGCTTCA 
TTAGCATCAT CTTGCTTCCC ATCGTTGGGA ACGCAGCAGA GCATGCCGGT 
GCCGTCATAT TTGCTCTCAA GAACAAGATG GATATTACTC TCGGAGTGTC 
TTTGGGCTCT GCCACACAGA TCTCCATGTT TGTGGTTCCA GTGAGTGTGA 
TTGTAGCCTG GACTATGGGA ATCCCAATGG ATCTTGATTT CAACCTGCTG 
GAGACTGGCT CTCTGTTTCT AGCAATATTA GTGACAGCCT TCACCCTCCA 
GGAGGGAGAA TCACATTATC TGAAGGGATT GATTCTTGTC CTGTGCTACG 
CTGTCATCAG CGTGTGCTTT TTCGTTATAA GACGGCGTTC TGCAGGAGGG 
ACGGACGGTG TTCACCATCT GGATGTGATT GTGTAGCAAA TTACTAACAG 
GCAGACCGCA GAAGCAGAAA CGTACGTACA TGCGCCTAAC ATATATATGG 
AGTCCGTACA GTACGTGCTA GCTACGGAGT ACTCCTGTAC ACTACTGTAC 
TACTGCTTGC ACAAGAGAAG AGGATCGAGT ACCGTAGCTA GCACAGGCGG 
CGGAGACGAG ACGATCTGCT TGCTTGAGGA GGCAGCCGAT CGAAGCCGGA 
CTGGGCGGAG ATCGATGCAT GGATCCAGTT TGTTTAGACT GACGGACGAT 
AGAGGATGAT ACCACGACCC AACCATCCGT CCCTGCAATT GGCTGGTTTG 
GTCATTCAAA TAGGGAATCA CAATTGGGTT TTAATGGGTT GCTTTAGTTT 
AGGTCGTTTT GGAATGGTTT GTTTATATTT ATCTTTTTCA AAGGAGTTTG 
TTTAGGTTTA TCGAACTACT AGAATATACA TCCATCTTAA GATTATTACA 
TTTTAAAATA AAGATATATA GTATG

Gene models with high sequence identity

AT3G51860.1 [+] show detail - cation exchanger 3
E-value: 2e-97; Score: 127.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Sodium/calcium exchanger membrane region	7.6e-19
HMMPfam	Sodium/calcium exchanger membrane region	8.6e-19
HMMPfam	Sodium/calcium exchanger membrane region	1.8e-18

See the detailed result >

AT3G51860.1

Model type: Protein coding
Short Description: cation exchanger 3
Computational Description: cation exchanger 3 (CAX3); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 1 (TAIR:AT2G38170.1); Has 3567 Blast hits to 3405 proteins in 1022 species: Archae - 24; Bacteria - 2167; Metazoa - 14; Fungi - 725; Plants - 252; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).
Link: InterPro Scan - TAIR