K07437

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07437

Determination of introduced cDNA(s)

  • J013072M14 - Rice Full-length cDNAs - Original: J013072M14

    full reading [+] show sequence

    Nucleotide sequence: J013072M14 - full reading 
    GACTCGCGTC GCGTCTCCTT TCTTTAATTG CTTCTCTCTC TTCTCCCAAT 
    TGCAGTCCTC TCCCCCCCAC TAATCCCACC CGGTAATCCC TCTCACGATG 
    AACGGCCGCG GCGGCGATTC TCCGGCGACG AATTGCTGCA GGGGCGGTTC 
    TTCTTCTTCG TCTTCGTCTT GGCGCCGGTC GATGTGGGTC TGGTCGTTGA 
    GTTTGTATGC GATTTGACCG CTCCCACGCA CCTGTGGCGT AGTTGGTTGT 
    GGTGCAACTG TTCGAGCTAT TGACTGTTTG GCTGGCTCTC TCCTCGGCGT 
    TATTCTGTGG CCGTTTGGGG GATTGGGAGT ATTGGAATCC TACTCTTCCA 
    GTTCTCCTAA GTTCTTCACA GGAACAAGTC TGCAATCAGG ATGGTTTCTG 
    AAGTCTTTGC TAACTTTGAG CTTAGTGACT TGATGGGTAA TTGATTCTCT 
    TGGGTGTTGT TGCATTTGTG CTGTAACGTG GATAGGAGTC ATGGAAGGTG 
    TGGTAACCAG TTCAGTTGGT GAACCAAATC AAGACAATGA GCCAAGGGAT 
    TCTTCAATAG AACTTCCCAG AGTCATTACT GACATGGAGA CTTCAGCCAT 
    GCATGATCCT GAAGCTCAAA AGCTAATTGG ACACGAAGCT GATACTGAAT 
    TAACGCCTTA TGAAGGAATG GAATTTGAGT CTGAAGATGC TGCGAGGGAT 
    TTCTACAGCA AATATGCAAG ACATGCAGGT TTTAGAATTC GAATCAGCAG 
    GTACACTCGT TCTAGACGTG ATAATTCAAT AATTTCTCGT CGTATTGTCT 
    GCTCAAAAGA GGGGTTTCAT GAAACTCGTG ATTGTGAAAA CCTCCATGTG 
    GACCAGAAAC AGCAAGCAAG GGTAGGAACT AGAGTTGGTT GCAAGGCCAT 
    GTTAATGATT AAAAAGTTTG GGCCTGACAA ATGGGTTGTT ACCAAATTCA 
    TAAAAATCCA TAATCATGGA CCGGTTCCAC CAAGAAAACC TCATGCTGGA 
    GAACATCATG ATTGTGATCT AATGGAAAAT CCACATTCTA TTGAGGTGGA 
    CCCTATTGAT GAGCCAGTCG AGGGTATGGA ATTTGAATCT GAAGAAGCTG 
    CTAAATTATT CTATATTAAC TATGCGAGGG TTAATGGTTT CCGTGCACGT 
    ATTAGCAGGT ACTGCCGTTC AAGACGTGAT AATTCAATCA TTTCACGCCA 
    GATCGTGTGT TCCAAGGAAG GCTTCCGTGA GGTTCGAGCC AGAAAAGATA 
    TTACAGATGG AGGCAAAACA ACGAAGCGCC CTAGAATGAT AACAAGAGTT 
    GGATGCAAAG CTATGATTGT AGTGAAAAGG ATGAACTCTG GAAAATGGAT 
    GGTTTCTAAA TTTGAGAAGG AGCATAACCA TTCTTTGTTA TCTTCTAGAG 
    CAGTCCCTAT TACATCAAAT GATTCTTCTA GAGAAGTTAT TGATTTTGCT 
    GCAACGAGTA ATGATCCTAA TGAAGTAAAG GCTGAAGGAT GTAGCACAGG 
    AATTCAATGT AATTCTACAG ATTCACTAAC TGTCCTTTAC AACCATCTAT 
    GTCAGGAAGC CATAAAATTT GCAAAAGAAG GGTCAGTTAC AGAAGAAATT 
    TACCATGTGG CAATGAATGC CTTGAAAGAG GCTGCAGAGA AGGTTTCTGA 
    AGTCAAAAGG AGTCACCCGA CAATGTCACA GAGTAAACAT GAAGTTATGC 
    AAATGGAAAC TATGAGTGCT TCGCAATGTT CAAATGATGA CAAACAGAAA 
    ACAATGACAC CACAGCTCAA GTTTTTGCAA GAGCCCAGTC CCAGTCTTGT 
    GCTAATACCA ACCAACCTTT TGACTCATTC AAGCTCGAAT TGTGCTGACA 
    ATATTCCACT CTCATGTGAT TTAACTATAA ATGCGGGGGA AGTCAAGCAT 
    GTATCAGAAA GTTCTTGTTT GGCTGCGAAC AGAAAGGAAG ACTCTTCGCA 
    GAAATCCCAG GGAAAGGATG AAAGGTTTCA TGTACTTTCT AAAGAAACTA 
    CGGTTGCTAT TCCTGCGATA CCTCTCACGC TGTACATGCC TATAATGAAG 
    AATCCAACTG GAGATTCTGC AGATGGCCAA TACAGGTTGT TGGCCGCTCC 
    TATTGAAGCA GTTCCAATTT CATACCGTCC TGCAGAACCC ATCCAACAAC 
    CACACGGAAG TTTTCCTAAT TCAGGGCCAC TACCCGGTTT TCTACCTAAA 
    CTGTACAAAC GAGGAAAAGG TCCAAACTCG CTGGTGCATG CTACTGCTCT 
    TGCTTGTGGT GCTCGTGTCG TGCCTCCTGA GGAGGCTGCC TCGCTGATCA 
    AGGCTATTGA GTCCAAGATC AGATCTGGAG GAGCCACAAT AGCAAAATTG 
    CCTTCAAGCA GCTTGACACC TCTAATTCCT GAGGTCGCCT CTATGTCATC 
    TTCTAGTGAA GATGATGAGG AAAATGACCA CAGTGAGCCA CTGATGGCGA 
    GTGTTGAACA CAACTGCCAT GATCAGAGCT CTGAGGAAAT GAAGTTGGAG 
    GCTGATCCAC CATCAGAGTT GGAAACTGAA GCTGAGAATT GTTCTGCGCA 
    GCCAGAAAAT GAAAACAACG GTCCTACTCA TTGCTGACAA CTGAGAAGTG 
    AGAACTGAAG TATTGAAGCT TTCTGAAATC AAAGCCCCAC AAGGTAGTGA 
    TTATATATAT ACTGTAAATT TTGAGCATTT ACATAAGATT GGATTTAGGA 
    TTCTAACAGC TTGTCTCACT TGAATTATAG ATTCTAATTG TGATAACTCA 
    AATAATTTAC TTCAATAAAG GACTTGTAAA GAGGGTCGCC TTGCTGTT

    Gene models with high sequence identity

    1. AT3G07500.1 [+] show detail - Far-red impaired responsive (FAR1) family protein
      E-value: 2e-27; Score: 122.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transcription factor, FAR1-related 7.5e-24
    HMMPfam Transcription factor, FAR1-related 9.1e-25

    See the detailed result >

    AT3G07500.1

    Model type
    Protein coding
    Short Description
    Far-red impaired responsive (FAR1) family protein
    Computational Description
    Far-red impaired responsive (FAR1) family protein; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: Far-red impaired responsive (FAR1) family protein (TAIR:AT2G43280.1); Has 895 Blast hits to 827 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 895; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR